Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq4825 560 3e-155 seq6 378 2e-100 seq8 333 8e-87 seq36 116 1e-21 seq4 114 4e-21 seq1 104 7e-18 >seq4825 Length=155848 Score = 560 bits (620), Expect = 3e-155 Identities = 714/976 (73%), Gaps = 8/976 (1%) Strand=Plus/Minus Query 28638 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 28697 ||||||| | || ||| | ||||||||||| |||| |||||||| ||||||| Sbjct 1272 TAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 1213 Query 28698 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAG 28756 || | | | | || || |||| || ||||| || |||||||| || || |||| Sbjct 1212 CCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAG 1154 Query 28757 TTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCA 28816 | || |||||||| || || |||||||| ||||| ||| || ||||| ||||| || | Sbjct 1153 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGCAACAATATTA 1094 Query 28817 TATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 28874 | || || ||| | | |||| | ||| || || || | ||||| || ||||| || Sbjct 1093 TTTCCGGTGCCATTATTCCGACTTCTGCA--GCTATAGGTTTGCACTTTTATCCAATCTG 1036 Query 28875 GGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 28934 |||||| ||| ||||||||||| | |||||||| || || | || | | || | Sbjct 1035 GGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGTCCTTATGAATTAATCGTTCT 976 Query 28935 CCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACT 28994 ||||| | |||| || | ||||||||| || |||||||| ||||| | || || Sbjct 975 ACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCT 916 Query 28995 AGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGT 29054 ||| ||| | || |||||| ||| ||||| |||||||| || ||||| || |||| || Sbjct 915 AGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT 856 Query 29055 TTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTC 29114 |||| | |||||||| |||||||||| ||| || | |||||| | || || || Sbjct 855 TTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTC 796 Query 29115 AGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTT 29174 || || ||||||| |||| | || ||||| || || || ||||| || |||||||| || Sbjct 795 TGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 736 Query 29175 CCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTC 29234 |||||| | ||||| ||||| || ||||| || || ||||||||||| ||||| ||||| Sbjct 735 TCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTC 676 Query 29235 GCTTGTCACGTCCTCGCTTGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTT 29293 | || || || | | ||| | | || || || ||| | ||| || | |||| Sbjct 675 TTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTT 617 Query 29294 ACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGAC 29353 ||| ||| || ||||||||||| |||||||| |||||||||||||| ||||| ||||| | Sbjct 616 ACAGGTTCGGGCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCC 557 Query 29354 GTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTG 29413 | || ||||||||||||||| |||||| || |||||| ||||||||||||| |||| Sbjct 556 GATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTG 497 Query 29414 CCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATC 29473 | ||||| || ||||| || ||||| |||| || || | || ||||| || || | Sbjct 496 CTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACC 437 Query 29474 TGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTT 29533 | || ||||| || || ||||| || | | || | | || ||||| |||||||||| Sbjct 436 TAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTT 377 Query 29534 GGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTC 29593 |||||||| | | || ||||||||||| || | ||||| ||||| || |||||||||| Sbjct 376 GGGCTGATATCATTAACCGCGCTAACCTTGGTATGGAAGTTATGCACGAACGTAATGCTC 317 Query 29594 ATAACTTCCCACTTGA 29609 |||||||||| || || Sbjct 316 ATAACTTCCCTCTAGA 301 >seq6 Length=36610139 Score = 378 bits (418), Expect = 2e-100 Identities = 443/595 (74%), Gaps = 3/595 (1%) Strand=Plus/Plus Query 28972 GAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCT 29031 ||| |||| ||||| | || ||||| ||| | || |||||| ||| ||||| |||||| Sbjct 34152490 GAGAGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCT 34152549 Query 29032 CCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGC 29091 || || ||||| || |||| |||||| | |||||||| |||||||||| ||| Sbjct 34152550 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCT 34152609 Query 29092 GACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAA 29151 || | |||||| | || || || || || ||||||| |||| | || ||||| || || Sbjct 34152610 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAG 34152669 Query 29152 CATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCG 29211 || ||||| || |||||||| || |||||| | ||||| ||||| || ||||| || || Sbjct 34152670 CACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCC 34152729 Query 29212 CTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TGCGTGAGACGACTGA 29270 ||||||||||| ||||| ||||| | || || | || | ||| | | || || || || Sbjct 34152730 CTATTTAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGA 34152788 Query 29271 AGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGT 29330 | | ||| || | ||||||| ||| || ||||||||||| |||||||| ||||| Sbjct 34152789 AAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAATATCGT 34152848 Query 29331 AGCCGCTCACGGTTACTTTGG-ACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCC 29389 ||||||||| ||||| ||||| || || ||||||||||||||| |||||| || | Sbjct 34152849 AGCCGCTCATGGTTATTTTGGTCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTC 34152908 Query 29390 GTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGG 29449 ||||| ||||||||||||| ||||| ||||| || ||||| || ||||| |||| || | Sbjct 34152909 GTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAG 34152968 Query 29450 GCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACA 29509 | | || ||||| || || || || ||||| || || ||||| || | | || | Sbjct 34152969 GTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATA 34153028 Query 29510 ACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGG 29564 | || ||||| |||||||||||||||||| | | || ||||||||||| || Sbjct 34153029 GTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGCGCTAACCTTGG 34153083 >seq8 Length=31745509 Score = 333 bits (368), Expect = 8e-87 Identities = 355/466 (76%), Gaps = 2/466 (0%) Strand=Plus/Plus Query 28959 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGT 29018 ||||||||| || |||||||| ||||| | || ||||| ||| | || |||||| ||| Sbjct 5168712 TTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGT 5168771 Query 29019 CGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCA 29078 ||||| |||||||| || ||||| || |||| |||||| | |||||||| ||||||| Sbjct 5168772 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCA 5168831 Query 29079 AGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGT 29138 ||| ||| || | |||||| | || || || || || ||||||| |||| | || Sbjct 5168832 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 5168891 Query 29139 GTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGT 29198 ||||| || || || ||||| || |||||||| || |||||| | ||||| ||||| || Sbjct 5168892 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 5168951 Query 29199 GTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TGC 29257 ||||| || || ||||||||||| ||||| ||||| | || || | || | ||| | Sbjct 5168952 ATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCA 5169010 Query 29258 GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGA 29317 | || || || ||| | ||| || | ||||||| ||| || ||||||||||| | Sbjct 5169011 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAA 5169070 Query 29318 CTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTT 29377 ||||||| |||||||||||||| ||||| ||||| || || ||||||||||||||| || Sbjct 5169071 CTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTT 5169130 Query 29378 TCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGT 29423 |||| || |||||| ||||||||||||| ||||| ||||| || Sbjct 5169131 TCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGT 5169176 Score = 95.1 bits (104), Expect = 4e-15 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 28638 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 28697 ||||||| | || ||| | ||||||||||| |||| |||||||| |||||| Sbjct 2878690 TAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGA- 2878748 Query 28698 TCCGTGTCTCCTTGCAGCCACCATCTG-CTTCATTATTGCATTCATTGCGGCACCACCAG 28756 ||| | | ||| || | |||| || ||||| || |||||||| || || |||| Sbjct 2878749 TCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAG 2878808 Query 28757 TTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCA 28816 | || |||||||| || || |||||||| ||||| ||| || ||||| ||||| || | Sbjct 2878809 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGCAACAATATTA 2878868 Query 28817 TATCGGGAGCC 28827 | || || ||| Sbjct 2878869 TTTCCGGTGCC 2878879 >seq36 Length=917149 Score = 116 bits (128), Expect = 1e-21 Identities = 188/266 (71%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 28654 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 28713 ||| | ||||||||||| |||| |||||||| ||||||| || | | | | Sbjct 329976 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACC 329917 Query 28714 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCAT 28772 || || |||| || ||||| || |||||||| || ||||| || |||||||| || Sbjct 329916 GCAACT-TCTGTATTTATTATCGCCTTCATTGCCATTCCTCCAGTAGATATTGATGGTAT 329858 Query 28773 CCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGT 28832 || |||||||| | ||| ||| || ||||| ||||| || || || || ||| | | Sbjct 329857 TCGTGAACCTGTTTCAGGATCTCTACTTTATGGCAACAATATTATTTCCGGTGCCATTAT 329798 Query 28833 ACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTT 28890 |||| | ||| || || || | ||||| || ||||| |||||||| ||| || Sbjct 329797 TCCGACTTCTGCA--GCTATAGGTTTGCACTTTTATCCAATCTGGGAAGCGGCTTCTGTT 329740 Query 28891 GATGAATGGCTCTACAACGGGGGACC 28916 ||||||||| | |||||||| || || Sbjct 329739 GATGAATGGTTATACAACGGTGGTCC 329714 >seq4 Length=35924511 Score = 114 bits (126), Expect = 4e-21 Identities = 171/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 29367 ATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGT 29426 ||||||| |||||| || |||||| ||||||||||||| ||||| ||||| || | Sbjct 4757218 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAAT 4757277 Query 29427 AGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAA 29486 | | || ||||| |||| || || | || ||| | || || || || | ||| || Sbjct 4757278 AAGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGACTTTCAACCTAAATGATTTCAA 4757337 Query 29487 CTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCT 29546 || ||||| || | | || | | | |||| ||||||||||| |||||| | | Sbjct 4757338 TTTCAACCAATCTGTAGTTGATAGTCAAGCCTGTGTAATTAATACTTGAGCTGATATCAT 4757397 Query 29547 CAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACT 29606 || |||||||| || || ||||| |||| || | |||||||||||||||| | || Sbjct 4757398 TAACCGCGCTAATCTTGGTAAAGAAGTTATGCTCGAACATAATGCTCATAACTTCTCTCT 4757457 Query 29607 TGA 29609 || Sbjct 4757458 AGA 4757460 Score = 86.0 bits (94), Expect = 2e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTT-ACTT 29348 ||||||||||| || ||||||||||| |||||||| ||||||||| ||| |||| | || Sbjct 4755093 GGTTACAAGTTCGGGCAAGAAGAAGAAACTTATAATATCGTAGCCATTCATGGTTAATTT 4755152 Query 29349 TGGACGTTTGATCTTCCAA 29367 ||| || || ||||||||| Sbjct 4755153 TGGCCGATTAATCTTCCAA 4755171 >seq1 Length=51465339 Score = 104 bits (114), Expect = 7e-18 Identities = 215/322 (67%), Gaps = 35/322 (11%) Strand=Plus/Plus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 ||||||| ||| || ||||||||||| ||| ||| |||||| || |||| ||||| || Sbjct 27733156 GGTTACAGGTTCGGGCAAGAAGAAGAAGCTTGTAATATCGTACCCACTCATGGTTATATT 27733215 Query 29350 GGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTT 29409 || || || || ||||||| |||| |||||| || | |||| ||||||||||||| Sbjct 27733216 GGTCGATTAATATTCCAATCTGCTAGTTTCAACAACTCTCATTCTTTACACTTCTTCCTA 27733275 Query 29410 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTC--TACAATGGCGT 29467 | | | || ||||| || ||| | || || || ||||| | Sbjct 27733276 GTT----------------GTATCTGGTTTACTAGCTTAAG-GTATCAGCACTATGGCTT 27733318 Query 29468 TTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTA 29527 | ||||| || ||||| | || ||||| || | | || | | | |||| |||| Sbjct 27733319 TCAATCTAAATGGTTTCAGTTTCAACCAATCTGTAGTTGATAGTCAAGACTGTGTAATTA 27733378 Query 29528 ATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTA 29587 |||||||||||||| | || || ||||| |||| ||||| ||| Sbjct 27733379 ATACTTGGGCTGATATCGATAACCGTGCTAA-----GCTT---GGTAAT--------GTA 27733422 Query 29588 ATGCTCATAACTTCCCACTTGA 29609 |||||||||||||||| || || Sbjct 27733423 ATGCTCATAACTTCCCTCTAGA 27733444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146657194777796