Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq4825 621 1e-173 seq6 407 4e-109 seq8 347 3e-91 seq36 154 4e-33 seq4 118 3e-22 >seq4825 Length=155848 Score = 621 bits (688), Expect = 1e-173 Identities = 735/988 (74%), Gaps = 8/988 (1%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| ||||||| || || ||||||||||| || || |||||||| || Sbjct 1277 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1218 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842 ||||| || | | | | || ||| | ||| || ||||| |||||||||||||| || Sbjct 1217 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 1159 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 ||| ||||| |||||||| || || || |||||| | || ||| |||||||| ||||| Sbjct 1158 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGCAACAA 1099 Query 18903 CATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCA 18960 || || || || ||| | |||||| | ||| || || || | ||||| || ||| Sbjct 1098 TATTATTTCCGGTGCCATTATTCCGACTTCTGCA--GCTATAGGTTTGCACTTTTATCCA 1041 Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTG 19020 || |||||||| ||| ||||||||||| | |||||||| || || | || | | Sbjct 1040 ATCTGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGTCCTTATGAATTAATC 981 Query 19021 GTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTAT 19080 || | ||||| | |||| || | ||||||||| || |||||||| ||||| | Sbjct 980 GTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTC 921 Query 19081 CGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCT 19140 || ||||| ||||| ||||||||| |||||| || |||||||||||||| || || || Sbjct 920 CGTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 861 Query 19141 GCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGT 19200 || || ||| | |||| ||| | |||||||| |||| || | ||||||| | || Sbjct 860 GCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGA 801 Query 19201 ATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCAC 19260 || |||||| ||||||| |||| |||||||||||||||| || |||||||| |||||| Sbjct 800 ATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 741 Query 19261 CCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCAC 19320 || || |||||| | || || |||||||| |||||||| || ||||||||||| ||||| Sbjct 740 CCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCAT 681 Query 19321 GGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTA 19379 ||||| | || || | || | ||| | | ||||| || ||| | | |||| || | Sbjct 680 GGTTCTTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 622 Query 19380 TGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTT 19439 || |||| ||| |||||||||||||| |||||||| || || || |||||||| ||||| Sbjct 621 AGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTT 562 Query 19440 TGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTT 19499 ||| || | || ||||| || || |||||||| |||||| |||| ||||| | Sbjct 561 TGGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCT 502 Query 19500 GGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATT 19559 |||||||||||||| || || || |||||| | || | || | ||||| ||||| || Sbjct 501 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTT 442 Query 19560 CAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGA 19619 |||| | ||||| || || || ||||| || | |||| | | || ||||| ||| | Sbjct 441 CAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAA 382 Query 19620 TACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAA 19679 |||||||||||| || | || || |||||||| || | || || |||||||||||||| Sbjct 381 TACTTGGGCTGATATCATTAACCGCGCTAACCTTGGTATGGAAGTTATGCACGAACGTAA 322 Query 19680 TGCTCATAACTTCCCACTTGATTTGGCT 19707 ||||||||||||||| || || || ||| Sbjct 321 TGCTCATAACTTCCCTCTAGACTTAGCT 294 >seq6 Length=36610139 Score = 407 bits (450), Expect = 4e-109 Identities = 455/604 (75%), Gaps = 3/604 (0%) Strand=Plus/Plus Query 19063 GAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCT 19122 ||| |||| ||||| | || ||||| ||||| ||||||||| |||||| || |||||| Sbjct 34152490 GAGAGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCT 34152549 Query 19123 CCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGC 19182 |||||||| || || |||| || ||| | |||| ||| | |||||||| |||| Sbjct 34152550 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCT 34152609 Query 19183 GACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAA 19242 || | ||||||| | || || |||||| ||||||| |||| |||||||||||||||| Sbjct 34152610 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAG 34152669 Query 19243 CATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCA 19302 || |||||||| |||||||| || |||||| | || || |||||||| |||||||| || Sbjct 34152670 CACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCC 34152729 Query 19303 CTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGA 19361 ||||||||||| ||||| ||||| | || || | || | ||| | | ||||| || || Sbjct 34152730 CTATTTAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGA 34152788 Query 19362 AGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGT 19421 | | | |||| || | || |||| ||| |||||||||||||| |||||||| || || Sbjct 34152789 AAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAATATCGT 34152848 Query 19422 TGCTGCTCATGGGTATTTTGGTCGGCTT-ATTTTCCAGTACGCATCCTTCAACAATAGCC 19480 || |||||||| |||||||||| | || || ||||| || || |||||||| | Sbjct 34152849 AGCCGCTCATGGTTATTTTGGTCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTC 34152908 Query 19481 GTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTG 19540 ||||| |||| ||||| | |||||||||||||| || || || |||||| | || | | Sbjct 34152909 GTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAG 34152968 Query 19541 GGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACA 19600 | | ||||| ||||| |||||| | ||||| || || || ||||| || | |||| | Sbjct 34152969 GTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATA 34153028 Query 19601 ACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTG 19660 | || ||||| ||| ||||||||||||| || | || || |||||||| || | | Sbjct 34153029 GTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGCGCTAACCTTGGTATGG 34153088 Query 19661 AGGT 19664 |||| Sbjct 34153089 AGGT 34153092 >seq8 Length=31745509 Score = 347 bits (384), Expect = 3e-91 Identities = 358/466 (77%), Gaps = 2/466 (0%) Strand=Plus/Plus Query 19050 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGT 19109 ||||||||| || |||||||| ||||| | || ||||| ||||| ||||||||| ||| Sbjct 5168712 TTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGT 5168771 Query 19110 TGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCA 19169 ||| || |||||||||||||| || || |||| || ||| | |||| ||| | ||||| Sbjct 5168772 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCA 5168831 Query 19170 AGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGT 19229 ||| |||| || | ||||||| | || || |||||| ||||||| |||| |||| Sbjct 5168832 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 5168891 Query 19230 ATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGT 19289 |||||||||||| || |||||||| |||||||| || |||||| | || || |||||||| Sbjct 5168892 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 5168951 Query 19290 GTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGC 19348 |||||||| || ||||||||||| ||||| ||||| | || || | || | ||| | Sbjct 5168952 ATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCA 5169010 Query 19349 GTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGA 19408 | ||||| || ||| | | |||| || | || |||| ||| |||||||||||||| | Sbjct 5169011 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAA 5169070 Query 19409 CTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCT 19468 ||||||| || || || |||||||| |||||||| || | || ||||| || || | Sbjct 5169071 CTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTT 5169130 Query 19469 TCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGT 19514 ||||||| |||||| |||| ||||| | |||||||||||||| Sbjct 5169131 TCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGT 5169176 Score = 131 bits (144), Expect = 5e-26 Identities = 154/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| ||||||| || || ||||||||||| || || |||||||| || Sbjct 2878685 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 2878744 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842 ||||| || | | | | || ||| | ||| || ||||| |||||||||||||| || Sbjct 2878745 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 2878803 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 ||| ||||| |||||||| || || || |||||| | || ||| |||||||| ||||| Sbjct 2878804 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGCAACAA 2878863 Query 18903 CATCATATCGGGAGCCGTCGTTCCGA 18928 || || || || ||| | |||||| Sbjct 2878864 TATTATTTCCGGTGCCATTATTCCGA 2878889 >seq36 Length=917149 Score = 154 bits (170), Expect = 4e-33 Identities = 209/287 (73%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||| | ||||||| || || ||||||||||| || || |||||||| || Sbjct 329997 TTCTGTAACTAGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 329938 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842 ||||| || | | | | || ||| | ||| || ||||| ||||||||||| || Sbjct 329937 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCCATTCC 329879 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 ||| ||||| |||||||| || || || |||||| |||| ||| |||||||| ||||| Sbjct 329878 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCAGGATCTCTACTTTATGGCAACAA 329819 Query 18903 CATCATATCGGGAGCCGTCGTTCCGA--GCAGCAATGCCATCGGACTACACTTCTACCCA 18960 || || || || ||| | |||||| | ||| || || || | ||||| || ||| Sbjct 329818 TATTATTTCCGGTGCCATTATTCCGACTTCTGCA--GCTATAGGTTTGCACTTTTATCCA 329761 Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACC 19007 || |||||||| ||| ||||||||||| | |||||||| || || Sbjct 329760 ATCTGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGTCC 329714 >seq4 Length=35924511 Score = 118 bits (130), Expect = 3e-22 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 19468 TTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGG 19527 |||||||| |||||| |||| ||||| | |||||||||||||| | | || ||| Sbjct 4757228 TTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAATAAGTATCTGG 4757287 Query 19528 TTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAG 19587 ||| | || | || | ||||| ||| | |||||| | |||| || || || ||||| Sbjct 4757288 TTTACTGCTTTAGGTATCAGCACTATGACTTTCAACCTAAATGATTTCAATTTCAACCAA 4757347 Query 19588 TCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCT 19647 || | |||| | | | |||| ||| ||||||| ||||| || | || || ||| Sbjct 4757348 TCTGTAGTTGATAGTCAAGCCTGTGTAATTAATACTTGAGCTGATATCATTAACCGCGCT 4757407 Query 19648 AACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCT 19707 || || || || || |||| ||||| |||||||||||||||| | || || || ||| Sbjct 4757408 AATCTTGGTAAAGAAGTTATGCTCGAACATAATGCTCATAACTTCTCTCTAGACTTAGCT 4757467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141140710938708