Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 seq6 84.2 2e-11 seq1 82.4 7e-11 >seq3 Length=50312079 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGA 131967 |||| ||||||||| | | | ||||| || ||||||||||| || ||| | ||| || Sbjct 6143254 CGCAGAACCAAATGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGCTAA-GGTCCGTCC 6143196 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||| || ||||| ||||| | | |||| || | ||| ||||||||||| || ||||| || Sbjct 6143195 ATCCTCTAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGATCTGGAGGGATACCTTCCTT 6143136 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || ||| || ||| | | || | ||| || | || || |||| || | Sbjct 6143135 GTCTTGAATCTTCGCTTTGACATTGTCAATAGTGTCCGAACTTTCAACCTCGAGGGTGAT 6143076 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| |||||||| | || |||||||| Sbjct 6143075 TGTCTTGCCAGTAAGAGTTTTCACAAATATCTGCAT 6143040 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||||||| | | | ||||| || ||||||||||| ||| || ||| || | Sbjct 6143482 CGCAGAACCAAATGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGCCAAGGTCCGTCCA 6143423 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||||||||| | | |||| || | ||| || ||||| || || || || || Sbjct 6143422 TCCTCTAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTG 6143363 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||| | | || | ||||| | || ||||| | || | Sbjct 6143362 TCCTGGATCTTAGCTTTGACATTATCAATGGTATCAGAGCTTTCGACTTCTAGAGTGATA 6143303 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || || |||| ||||||||||| Sbjct 6143302 GTCTTGCCAGTAAGTGTCTTTACAAAAATCTGCAT 6143268 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | |||| ||| | | | ||||| |||||||| ||||||||| || || Sbjct 6144173 ACGCAGACGAAGCACCAGATGAAGGGTAGACTCCTTTTGAATATTGTAGTCGGCCAGTGT 6144114 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || || | | | || || | ||| || ||||| || ||||| Sbjct 6144113 GCGGCCATCCTCCAGCTGCTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGGATGCC 6144054 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||| ||| ||||| | || | || || | ||| || || | Sbjct 6144053 TTCCTTGTCCTGAATCTTTGCTTTCACATTATCAATGGTGTCTGAGCTCTCAACCTCAAG 6143994 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||||||||| || | || ||||||||| Sbjct 6143993 TGTGATAGTCTTCCCAGTCAGAGTCTTCACAAATATCTGCATG 6143951 >seq6 Length=36610139 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||||||||| |||||||| | || || |||||| || ||||| || | | Sbjct 34079775 GACTCTTTTTGAATATTGTAGTCTGCAAGTGTGCGGCCATCTTCAAGTTGTTTTCCAGCA 34079716 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | ||| || ||||| || ||||| ||||| || ||| ||| ||| | Sbjct 34079715 AATATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGAATCTTTGCTTTGACA 34079656 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| |||| |||||| || | ||| | || || || |||| ||| || Sbjct 34079655 TTATCAATAGTGTCGGAGCTCTCCACCTCTAGCGTGATGGTCTTTCCTGTCAAAGTCTTC 34079596 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 34079595 ACAAAAATCTGCAT 34079582 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | || ||||| ||||| |||||||| | |||||| ||| || Sbjct 34407652 ACCAAGTGGAGGGTAGATTCTTTCTGAATATTGTAGTCAGCAAGGGTACGACCATCCTCA 34407593 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| ||||| | | | || || | ||| || ||||| || |||||||||||||| | Sbjct 34407592 AGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCTTTATCCTGA 34407533 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 |||||| |||| | || | || || | |||||| || | || | || || Sbjct 34407532 ATTTTTGCCTTCACATTATCAATTGTGTCTGAGCTCTCCACCTCCAAAGTAATTGTCTTT 34407473 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| || || | ||||||||||| Sbjct 34407472 CCTGTCAATGTCTTCACAAAAATCTGCAT 34407444 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTT 131972 ||||||||| | | | || || || ||||| ||||| || ||| | |||||| ||| | Sbjct 34641555 AACCAAATGAAGGGTCGATTCCTTCTGAATATTGTAATCAGCTAA-GGTACGACCATCCT 34641497 Query 131973 CGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 | ||||||||||| | | |||| || | ||| ||||||||||| || |||||||| || Sbjct 34641496 CAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCTGGAGGGATACCTTCTTTGTC 34641439 >seq1 Length=51465339 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | ||||| || || || ||||| || | ||| | | Sbjct 45561687 CGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCTGCAAGGGTCCTTCCA 45561628 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| ||||| | | |||| | | ||| ||||||||||| || ||||| ||| Sbjct 45561627 TCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTA 45561568 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || |||| | || | || |||| ||||||||| | || | Sbjct 45561567 TCCTGAATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCCACTTCCAAGGTGATA 45561508 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||||||||| || | || |||||||| Sbjct 45561507 GTCTTTCCAGTCAGAGTCTTAACAAAGATCTGCAT 45561473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476582448429360