Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq6 84.2 2e-11 >seq6 Length=36610139 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | |||||||| | || || | || || ||| | Sbjct 34406532 ATGCAGATCTTTGTGAAAACTCTTACCGGAAAGACCATAACCCTTGAGGTTGAAAGCTCT 34406591 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || ||| || || || || || || ||||||||| Sbjct 34406592 GACACAATCGACAATGTCAAGGCTAAGATTCAAGACAAGGAAGGCATCCCTCCCGATCAG 34406651 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 || || || || | | |||||||| ||||| |||| || | | | ||| || || || Sbjct 34406652 CAGAGGCTTATCTTTGCGGGCAAACAGCTCGAGGATGGAAGGACT-TTAGCTGACTATAA 34406710 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||| || ||||||||| ||||||| || Sbjct 34406711 TATTCAGAAGGAATCCACCCTTCATTTGGT 34406740 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || || ||||| | |||||| | || || || | | Sbjct 34079582 ATGCAGATTTTTGTGAAGACTTTGACAGGAAAGACCATCACGCTAGAGGTGGAGAGCTCC 34079641 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || ||| ||| ||| || |||||||| || || || || ||| Sbjct 34079642 GACACTATTGATAATGTCAAAGCAAAGATTCAAGACAAAGAGGGCATCCCACCAGACCAG 34079701 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || || | | || |||||||| ||||||| | | | || |||||| Sbjct 34079702 CAGAGGCTTATATTTGCTGGAAAACAACTTGAAGATGGCCGCACACTTGCAGACTACAAT 34079761 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||||||||||| || ||| | ||| | ||| Sbjct 34079762 ATTCAAAAAGAGTCTACCCTCCATCTTGTG 34079791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445067549680320