Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq3 113 4e-20 seq6 89.7 4e-13 seq4 82.4 6e-11 >seq3 Length=50312079 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| |||||||| || | ||||| ||||| |||||| | ||| |||| Sbjct 6143724 ATGCAAATCTTTGTTAAGACTCTCACTGGGAAGACGATTACCCTTGAAGTAGAAAGTTCT 6143783 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | | |||||| |||||| ||||| || || | ||| || || Sbjct 6143784 GATACAATTGACAATGTGAAAGCGAAAATTCAAGACAAGGAGGGAATTCCCCCAGACCAG 6143843 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || ||| | |||| ||| || || ||||| || ||| || || ||| ||||||||| Sbjct 6143844 CAGAGGTTGATTTTTGCTGGTAAGCAATTGGAGGATGGTAGGACATTGGCTGATTACAAC 6143903 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| ||||| || || ||| | ||||||||||| |||| || Sbjct 6143904 ATTCAAAAGGAATCCACTCTTCATCTGGTATTGAGGTTGAGAGGTGG 6143950 >seq6 Length=36610139 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || |||||||||||| | |||||||||||||||||| | ||| ||| | Sbjct 34406760 ATGCAGATCTTTGTTAAAACACTCACTGGCAAGACCATTACCTTAGAAGTTGAAAGCTCT 34406819 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | | || || || ||| ||||| |||||| | || |||||| Sbjct 34406820 GACACCATTGACAATGTTAAGGCTAAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAG 34406879 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || |||||||| | ||||||||||| | || ||| | || | | |||||||| Sbjct 34406880 CAGAGGCTTATCTTCGCGGGCAAACAGCTTGAGGATGGTCGTACATTAGCTGATTACAAT 34406939 Query 106440 ATACAAAAAGAATCTACACTACAT 106463 || || || ||||| || || ||| Sbjct 34406940 ATTCAGAAGGAATCCACCCTTCAT 34406963 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| || || | ||||| ||||| |||||| |||| ||| | Sbjct 34641802 ATGCAAATCTTTGTCAAGACGCTTACTGGAAAGACAATTACCTTGGAGGTAGAGAGCTCT 34641861 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | | || || ||| || |||||||| || | || ||||| Sbjct 34641862 GATACAATTGACAATGTTAAGGCAAAGATCCAAGACAAAGAGGGAATTCCTCCAGATCAG 34641921 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || ||| | || | ||| || || || || || || | || ||| ||||||||| Sbjct 34641922 CAGAGGTTGATATTTGCTGGGAAGCAGTTGGAGGACGGAAGGACATTGGCAGATTACAAC 34641981 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGG 106475 || ||||| ||||| ||||| ||||| ||||||||| Sbjct 34641982 ATTCAAAAGGAATCCACACTTCATTTGGTATTGAGG 34642017 >seq4 Length=35924511 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/122 (75%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 106374 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGAT 106433 ||||| || ||| | |||| ||| || || |||||||||||| | |||| | | ||| Sbjct 27885222 GATCAGCAGAGGTTGATTTTTGCTGGAAAGCAATTAGAAGATGGAAGAACTCTTGCAGAT 27885281 Query 106434 TACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG-ATAATG 106492 |||||||| || ||||| || || || || || ||| | ||| | |||||||| | |||| Sbjct 27885282 TACAACATTCAGAAAGAGTCAACCCTTCACTTGGTACTTAGGCTTCGAGGAGGAACAATG 27885341 Query 106493 AT 106494 || Sbjct 27885342 AT 27885343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402305936230208