Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 190 3e-42 seq1 178 2e-38 >seq3 Length=50312079 Score = 190 bits (210), Expect = 3e-42 Identities = 386/561 (69%), Gaps = 14/561 (2%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCG 1455774 |||||||| || | |||||| ||||||| ||| ||||||| || | |||| | Sbjct 34658450 GAGCCGCTCCTCGCCCCGAACCCGGACCGCTTCTGTA-TGTTCCCAATTCAATACCCTCA 34658508 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||||| |||||| | |||| |||||||||| || |||||||||||||| ||||| Sbjct 34658509 GATCTGGGAGATGTACAAGAAAG-CCGAGGCCTCTTTCTGGACCGCCGAGGAAGTCGATT 34658567 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 | || | || ||||||| | ||| || ||| || || || | | Sbjct 34658568 TATCTCAAGATAATGTTCACTGGGAAGCTTTGACTTCTGATGAGAAGCACTTTATTACCC 34658627 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 | || ||||| |||||||||||| |||||||| ||| |||||| ||||||| | Sbjct 34658628 ATGTTCTCGC-TTTTTTCGCCGCTTCTGATGGCATTGTGCTCGAGAATTTGGCCGGGAGG 34658686 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 |||||||| ||||| || || | ||||| | ||||| ||||| ||||| || || Sbjct 34658687 TTTATGAAGGAGGTGCAGGTGGCGGAGGCGAGGGCTTTTTATGGGTTTCAGATTGCGATA 34658746 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || || || || || || | || | || | || | || | ||||| ||| Sbjct 34658747 GAGAATATTCATTCGGAGATGTATAGTTTGTTGTTGGAGAGTTATATTAAGGATTCGGAG 34658806 Query 1456075 GAGAAGGACCACCTCTTTC-GCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 ||||||| | | | ||| | || || || ||| | |||| || ||| |||||| | Sbjct 34658807 GAGAAGG-CGAGGTTGTTCAGGGCGATTGAGACGATTCCGTGTGTCGAGAAGAAGGCCAA 34658865 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGA-GGGCCTCGACACTTTGCCGAGCGGCTCGTCGG 1456192 |||||||||| |||||| | ||| ||| ||| ||||| ||| || | | | Sbjct 34658866 GTGGGCGATGAGGTGGAT--TGATGGAGGGGAGTCG----TTTGCGGAGAGGATTATTGC 34658919 Query 1456193 CTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 ||||| | || || || || ||||||||||| || |||||||| || |||||||| || Sbjct 34658920 GTTTGCTTGTGTGGAAGGGATTTTTTTCTCGGGGAGCTTCTGCGCGATTTTTTGGCTGAA 34658979 Query 1456252 GAAGCGCGGCCTCATGCCCGG 1456272 |||| | || || |||||||| Sbjct 34658980 GAAGAGGGGGCTTATGCCCGG 34659000 >seq1 Length=51465339 Score = 178 bits (196), Expect = 2e-38 Identities = 370/542 (68%), Gaps = 12/542 (2%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 |||||| |||| || | ||||||| |||| |||| | || |||||||||||| | Sbjct 39366286 AACCCGGACCGGTTCTGCATGTTCCCTATCCAATACCCCCAAATCTGGGAAATGTACAAG 39366227 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCC-GACACGGTCC 1455852 |||| ||||||| ||||| ||||||||||| || ||||| | ||| ||||| | | Sbjct 39366226 AAAG-CCGAGGCTTCCTTCTGGACCGCCGAAGAAGTCGATTTAT-CGCAAGACACTGCTC 39366169 Query 1455853 ACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTC 1455912 | | | || | | ||||| || ||| ||| ||||| ||||| ||| ||| Sbjct 39366168 ATTTCCAAACCCTAACTCCCAACGAGAAACACTTCGTCACTCACGTGCTCGC-TTTCTTC 39366110 Query 1455913 GCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA 1455972 ||||| || ||||||||| |||||| || |||||| | || ||||| |||||||| Sbjct 39366109 GCCGCTTCTGACGGCATCGTGCTCGAGAATCTCGCCGGCAGGTTCATGAAGGAGGTCCAG 39366050 Query 1455973 TTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAA 1456032 || | ||||| | ||| ||||| ||||||||||| ||||| || || || || || Sbjct 39366049 GTGGCGGAGGCTAGGGCGTTCTACGGCTTCCAGATCGCGATCGAGAATATACATTCGGAG 39365990 Query 1456033 ACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTT 1456092 | || | || | || || || || ||||| || |||||| | ||| Sbjct 39365989 ATGTATAGTTTGCTTCTTGAGACGTATGTGAAGGATTCGTGTGAGAAGAGTAGGTTGTTT 39365930 Query 1456093 CGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC 1456152 | || || || ||| | |||| || || ||||| | |||||| ||| |||||| Sbjct 39365929 AGGGCGATTGAGACGATTCCGTGTGTCGAGAGGAAGGCGAATTGGGCGCTGAGGTGGAT- 39365871 Query 1456153 AACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGC 1456210 | |||||| || ||| || ||| || | || | ||||| | || || || Sbjct 39365870 -TGATGGAGGG----GAGTGTTTCGCGGAGAGGATTGTGGCGTTTGCTTGTGTGGAAGGG 39365816 Query 1456211 ATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCC 1456270 || ||||||||||| ||||| ||||| | |||||| | |||||| | || || ||||| Sbjct 39365815 ATTTTTTTCTCGGGGAGTTTTTGCGCGGTGTTTTGGTTGAAGAAGAGAGGGCTGATGCCT 39365756 Query 1456271 GG 1456272 || Sbjct 39365755 GG 39365754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177345723429812