Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq4825 603 1e-167 seq6 399 3e-106 seq8 358 8e-94 seq36 149 8e-31 seq4 111 2e-19 seq1731 105 8e-18 seq4826 102 1e-16 seq3 86.0 8e-12 >seq4825 Length=155848 Score = 603 bits (668), Expect = 1e-167 Identities = 732/992 (74%), Gaps = 5/992 (1%) Strand=Plus/Minus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 ||||| | ||| |||| ||| | ||||| || || | || ||||| || || || Sbjct 1277 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1218 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || ||| | ||| | |||||| ||||| || || |||||||| | |||||||| Sbjct 1217 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 1159 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || || || || || |||||||| || |||| || || | ||||||||||| Sbjct 1158 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGCAACAA 1099 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 || || || ||||| || |||| |||| || || ||| | ||||| ||||| || Sbjct 1098 TATTATTTCCGGTGCCATTATTCCGACTTCTGCAGCTATAGGTTTGCACTTTTATCCAAT 1039 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 ||||||||| || || ||||||| ||| | || ||||||||||||| || | | || Sbjct 1038 CTGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGTCCTTATGAATTAATCGT 979 Query 178148 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 178207 | ||||| | ||||| | | |||||||| ||||||||||| ||| | ||| Sbjct 978 TCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCG 919 Query 178208 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGC 178267 | |||||||||| || ||||| ||| ||||| || ||||| || ||||| || | || Sbjct 918 TCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 859 Query 178268 AGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCAT 178327 || ||| || |||| || |||||||||| |||||||| | ||||| || || || Sbjct 858 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 799 Query 178328 CTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCC 178387 ||||||||| ||||||| |||| |||| ||||| || || |||||||| || |||||||| Sbjct 798 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 739 Query 178388 CTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGG 178447 || |||||||| || || || ||||||||||| ||||| || || ||||| ||||| || Sbjct 738 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGG 679 Query 178448 TTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGG 178507 ||||||||| || ||| | | | ||||| || |||| ||||| || | || Sbjct 678 TTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 619 Query 178508 TTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGG 178567 ||| | |||||| ||||||||||| || || || ||||| || || ||||| || || || Sbjct 618 TTACAGGTTCGGGCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 559 Query 178568 TCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGC 178627 || || ||||||||||||||| ||||||||||| ||||| | ||||||||||| || Sbjct 558 CCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGC 499 Query 178628 AGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAA 178687 || ||||||||||| || |||||||| || || | || | ||||| ||||| || || Sbjct 498 TGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAA 439 Query 178688 CCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACAC 178747 ||| ||||| ||||| |||||||| || | | || | ||||| ||||| | || || Sbjct 438 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATAC 379 Query 178748 ATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGC 178807 ||||| || | | ||||| || || || |||||||| |||||||| || || || Sbjct 378 TTGGGCTGATATCATTAACCGCGCTAACCTTGGTATGGAAGTTATGCACGAACGTAATGC 319 Query 178808 GCACAACTTCCCGCTTGATCTTGCAGCAGCTG 178839 || |||||||| || || ||| ||| |||| Sbjct 318 TCATAACTTCCCTCTAGA-CTT--AGCTGCTG 290 Score = 462 bits (512), Expect = 3e-125 Identities = 701/991 (71%), Gaps = 6/991 (1%) Strand=Plus/Plus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | |||| || || || ||||| || ||||| || || | || Sbjct 33149 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGTCTATTGCTCT 33208 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||| ||| | || | || || ||| | || || ||| | ||||| || | Sbjct 33209 TTCCTTGTGCCTATTTCGCTGTAGGAGGCTGGTTCACAGGTACAACCTTTGTAACTTCAT 33268 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTA-CGGCAGC 179410 |||| ||||| || | || ||||||||| | || || ||| | ||||||| | || || Sbjct 33269 GGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTCTTAACTGCCGC 33326 Query 179411 TGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 179470 || || || |||||| || | | | |||||| | | |||| ||||||||||| | Sbjct 33327 AGTTTCTACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGTCCTGAAGC 33386 Query 179471 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCA 179530 || ||| |||| || ||||| ||| | || || || |||| ||| || || ||||| Sbjct 33387 ACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCCCTCCA 33446 Query 179531 CGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTG 179589 ||||| |||| || || || |||||| | | ||||| ||||||||||| ||| | Sbjct 33447 TGGTGCTTTCGGACTAATAGGCTTCATGTTACGTCAATTCGAACTTGCTCGATCTGTTCA 33506 Query 179590 GTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTT 179649 | | ||||||| ||||| || || ||||||||||| |||||||| || || ||| | Sbjct 33507 ATTGC-GACCTTATAATGCAATCGCGTTTTCTGGTCCAATTGCTGTTTTTGTTTCTGTAT 33565 Query 179650 TCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGG 179709 |||| || ||||| | ||||| || |||||| || ||||| |||||||| || | Sbjct 33566 TCCTGATTTATCCACTAGGACAATCTGGTTGGTTCTTTGCGCCAAGTTTTGGTGTAGCAG 33625 Query 179710 CGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCC 179769 | || || | ||| | || || |||| || || || || ||||| | ||||| || | Sbjct 33626 CTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACATTAAACCCATTTC 33685 Query 179770 ATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTA 179829 |||||||||||||||| || || | || | || |||| | ||||| ||||| | || Sbjct 33686 ATATGATGGGAGTTGCAGGGGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTA 33745 Query 179830 CTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATT 179889 ||||||| ||||| || | ||||||||| || |||||||| || || ||| | Sbjct 33746 CTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACC 33805 Query 179890 CGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 179949 | || || | ||||| |||||||| |||||||| || |||||||| ||||| || |||| Sbjct 33806 CAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCGAACCGCTTTTGGTCCCAAATCT 33865 Query 179950 TCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTA 180009 | || |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | Sbjct 33866 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 33925 Query 180010 TGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACG 180069 ||| |||||| || |||| | ||||||| || || ||||| || || || | Sbjct 33926 CTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTGCGCGCCTATG 33985 Query 180070 ATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCA 180129 | ||||| |||||| || | || ||||||||||| || |||||||| |||||||| | Sbjct 33986 ACTTCGTTTCTCAGGAAATTCGCGCGGCAGAAGATCCTGAATTTGAGACTTTCTACACAA 34045 Query 180130 AGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATG 180189 | || ||||| | || ||||| | ||||| ||| |||| | ||||| || |||| Sbjct 34046 AAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 34105 Query 180190 AGTCATTCGTATTCCCAGAAGAAGTTCTGCC 180220 | | ||||||| || || ||||| || Sbjct 34106 AAAACCTTATATTCCCTGAGGAGGTTCTACC 34136 >seq6 Length=36610139 Score = 399 bits (442), Expect = 3e-106 Identities = 451/603 (75%), Gaps = 1/603 (0%) Strand=Plus/Plus Query 178188 GAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCT 178247 ||| |||| ||| | |||| |||||||||| || ||||| ||| ||||| || ||| Sbjct 34152490 GAGAGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCT 34152549 Query 178248 CCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCT 178307 || || ||||| || | || || ||| || |||| || |||||||||| |||||| Sbjct 34152550 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCT 34152609 Query 178308 GACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAA 178367 || | ||||| || || ||||||||||| ||||||| |||| |||| ||||| || || Sbjct 34152610 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAG 34152669 Query 178368 CACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCA 178427 |||||||| || |||||||| || |||||||| || || || ||||||||||| ||||| Sbjct 34152670 CACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCC 34152729 Query 178428 CTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAA 178487 || || ||||| ||||| ||||||||||| || ||| | | | ||||| || ||| Sbjct 34152730 CTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAA 34152789 Query 178488 ACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTT 178547 | ||||| || | ||||| | |||||| ||||||||||| || || || ||||| Sbjct 34152790 AATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAATATCGTA 34152849 Query 178548 GCAGCACATGGCTACTTCGGT-CGTTTGATCTTCCAATATGCTTCATTCAACAACTCACG 178606 || || ||||| || || ||| || || ||||||||||||||| ||||||||||| || Sbjct 34152850 GCCGCTCATGGTTATTTTGGTCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCG 34152909 Query 178607 TTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGG 178666 ||| | ||||||||||| || || ||||||||||| || |||||||| || || | || Sbjct 34152910 TTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGG 34152969 Query 178667 CGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGG 178726 | ||||| ||||| || ||||| ||||| ||||| |||||||| || | | || | Sbjct 34152970 TATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAG 34153029 Query 178727 ACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGA 178786 ||||| ||||| | || || ||||| || | | ||||| || || || ||||| Sbjct 34153030 TCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGCGCTAACCTTGGTATGGA 34153089 Query 178787 AGT 178789 || Sbjct 34153090 GGT 34153092 >seq8 Length=31745509 Score = 358 bits (396), Expect = 8e-94 Identities = 359/466 (77%), Gaps = 0/466 (0%) Strand=Plus/Plus Query 178176 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 178235 |||||||| ||||||||||| ||| | |||| |||||||||| || ||||| ||| Sbjct 5168713 TACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTT 5168772 Query 178236 GCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAA 178295 ||||| || ||||| || ||||| || | || || ||| || |||| || |||||||| Sbjct 5168773 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAA 5168832 Query 178296 GGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTT 178355 || |||||||| | ||||| || || ||||||||||| ||||||| |||| |||| Sbjct 5168833 GGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTA 5168892 Query 178356 TTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTA 178415 ||||| || || |||||||| || |||||||| || |||||||| || || || |||||| Sbjct 5168893 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTA 5168952 Query 178416 TTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGT 178475 ||||| ||||| || || ||||| ||||| ||||||||||| || ||| | | | Sbjct 5168953 TTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGG 5169012 Query 178476 GAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACA 178535 ||||| || |||| ||||| || | ||||| | |||||| ||||||||||| || Sbjct 5169013 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACT 5169072 Query 178536 TACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTC 178595 || || ||||| || || ||||| || || || || || ||||||||||||||| ||| Sbjct 5169073 TATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 5169132 Query 178596 AACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAG 178641 |||||||| ||||| | ||||||||||| || || |||||||||| Sbjct 5169133 AACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAG 5169178 Score = 113 bits (124), Expect = 5e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 ||||| | ||| |||| ||| | ||||| || || | || ||||| || || || Sbjct 2878685 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 2878744 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || ||| | ||| | |||||| ||||| || || |||||||| | |||||||| Sbjct 2878745 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 2878803 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || || || || || |||||||| || |||| || || | ||||||||||| Sbjct 2878804 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGCAACAA 2878863 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTT 178078 || || || ||||| || |||| |||| || || ||| | ||||| Sbjct 2878864 TATTATTTCCGGTGCCATTATTCCGACTTCTGCAGCTATAGGTTTGCACTT 2878914 >seq36 Length=917149 Score = 149 bits (164), Expect = 8e-31 Identities = 194/266 (73%), Gaps = 2/266 (1%) Strand=Plus/Minus Query 177870 ACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCA 177929 ||| | ||||| || || | || ||||| || || ||||||| || ||| | ||| | Sbjct 329976 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACC 329917 Query 177930 GCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCAT 177988 |||||| ||||| || || |||||||| | || ||| || || || || || || || Sbjct 329916 GCAACT-TCTGTATTTATTATCGCCTTCATTGCCATTCCTCCAGTAGATATTGATGGTAT 329858 Query 177989 CCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGT 178048 |||||||| || | || || || | ||||||||||| || || || ||||| || | Sbjct 329857 TCGTGAACCTGTTTCAGGATCTCTACTTTATGGCAACAATATTATTTCCGGTGCCATTAT 329798 Query 178049 TCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGA 178108 ||| |||| || || ||| | ||||| ||||| ||||||||||| || || |||| Sbjct 329797 TCCGACTTCTGCAGCTATAGGTTTGCACTTTTATCCAATCTGGGAAGCGGCTTCTGTTGA 329738 Query 178109 TGAGTGGCTGTATAACGGTGGTCCTT 178134 ||| ||| | || ||||||||||||| Sbjct 329737 TGAATGGTTATACAACGGTGGTCCTT 329712 >seq4 Length=35924511 Score = 111 bits (122), Expect = 2e-19 Identities = 180/257 (70%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 178583 ATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGT 178642 ||||||| ||||||||||| ||||| | ||||||||||| || || ||||||||| | Sbjct 4757218 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAAT 4757277 Query 178643 TGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAA 178702 | |||||||| || || | || | ||||| ||| | || ||||| |||| ||||| Sbjct 4757278 AAGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGACTTTCAACCTAAATGATTTCAA 4757337 Query 178703 CTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCT 178762 |||||||| || | | || | |||| |||| | || || || || || | | Sbjct 4757338 TTTCAACCAATCTGTAGTTGATAGTCAAGCCTGTGTAATTAATACTTGAGCTGATATCAT 4757397 Query 178763 CAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCT 178822 ||||| || ||| || | ||||| |||| ||| | || || || |||||| | || Sbjct 4757398 TAACCGCGCTAATCTTGGTAAAGAAGTTATGCTCGAACATAATGCTCATAACTTCTCTCT 4757457 Query 178823 TGATCTTGCAGCAGCTG 178839 || ||| ||| |||| Sbjct 4757458 AGA-CTT--AGCTGCTG 4757471 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/216 (70%), Gaps = 9/216 (4%) Strand=Plus/Minus Query 179492 GTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGG 179551 ||| ||| | || || | |||| ||| || || || || ||||| |||| || || | Sbjct 12713499 GTGTCAATTAGGTGGTGTGTGGACTTTTGTTGCCCTTCATGGTGCTTTCGGACTAATAGC 12713440 Query 179552 TTTCATGCTTAGGCAATTTGAACTTGCTCGCCTGATTGGTATCA-----GACCTTACAAT 179606 || |||| | | ||||| |||||| | || |||| ||| ||| ||||||| ||| Sbjct 12713439 TT-CATGTTATGTCAATTCGAACTTAATTGCTTGATCGGT-TCAATTGCGACCTTATAAT 12713382 Query 179607 GCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTG 179666 || || || ||||||||||| |||| ||| || || ||| ||||| || ||||| | Sbjct 12713381 GCAATCGCGTTTTCTGGTCCGATTGTTGTTTTTGTTTATGTATTCCTGATTTATCCACTA 12713322 Query 179667 GGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGT 179702 |||| || ||| || || |||| || |||||| Sbjct 12713321 TGACAATCTGGTTGATTCTTTGCGCAGT--TTTGGT 12713288 >seq1731 Length=31681 Score = 105 bits (116), Expect = 8e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 180040 TTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAG 180099 ||||||| || || ||||| || || || || ||||| |||||| || | || |||| Sbjct 4297 TTGGTCTGGCCCTGAACCTCCGCGCCTATGACTTCGTTTCTCAGGAAATTCGCGCGGCAG 4238 Query 180100 AAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTG 180159 ||||||| || |||||||| |||||||| || || ||||| | || ||||| | |||| Sbjct 4237 AAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTCTTAAACGAAGGTATTCGTG 4178 Query 180160 CATGGTTGGCACCAGTTGATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGC 180219 | ||| |||| | ||||| || ||||| | | ||||||| || || ||||| | Sbjct 4177 CTTGGATGGCGGCTCAAGATCAGCCTCATGAAACCCTTATATTCCCTGAGGAGGTTCTAC 4118 Query 180220 C 180220 | Sbjct 4117 C 4117 >seq4826 Length=244980 Score = 102 bits (112), Expect = 1e-16 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 180040 TTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAG 180099 ||||||| || || ||||| || || || || ||||| |||||| || | || |||| Sbjct 499 TTGGTCTGGCCCTGAACCTCCGCGCCTATGACTTCGTTTCTCAGGAAATTCGCGCGGCAG 440 Query 180100 AAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTG 180159 ||||||| || |||||||| |||||||| || || ||||| | || ||||| | |||| Sbjct 439 AAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTCTTAAACGAAGGTATTCGTG 380 Query 180160 CATGGTTGGCACCAGTTGATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGC 180219 | ||| |||| | ||||| || ||||| | ||||||| || || ||||| | Sbjct 379 CTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 320 Query 180220 C 180220 | Sbjct 319 C 319 >seq3 Length=50312079 Score = 86.0 bits (94), Expect = 8e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 180040 TTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAG 180099 ||||||| || || |||| || || || || ||||| |||| | || | || |||| Sbjct 34945760 TTGGTCTAGCCCTGAACCCGCGCGCCTATGACTTCGTTTCTCAGAAAATTCGCGCGGCAG 34945819 Query 180100 AAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTG 180159 ||||||| || |||||||| |||||||| || || ||||| | || ||||| | |||| Sbjct 34945820 AAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTCTTAAACGAAGGTATTCGTG 34945879 Query 180160 CATGGTTGGC 180169 | ||| |||| Sbjct 34945880 CTTGGATGGC 34945889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605973042470880