Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3 131 2e-25 seq1 127 3e-24 seq8 84.2 3e-11 >seq3 Length=50312079 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | ||||||| ||| | || | ||||| |||| ||||||| Sbjct 36375076 CCCCCTTGATCAACATAGCGAGCAGTGTCATTGAAAACACGAAGCATTGGAACAATACCA 36375017 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| |||||||||||||| ||||||||| || | || || |||||| || ||| Sbjct 36375016 TTGGATGTACCATTTGTTCCACGAATATAACTACCAGTAGCACGGATATTATGAAGAGAC 36374957 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || ||| ||| | |||||| ||||||||||||||||| Sbjct 36374956 ACACCGATTCCTCCAGCTGATTTGCTGATCACAGCACACTCCTTCAATGTGTCATATATG 36374897 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || || || ||||| |||| || || || |||||| Sbjct 36374896 CCTTCAATACTGTCATCCTTCATACAAACCAGGAAGCAGCTA 36374855 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | ||||||| ||| | || | ||||| |||| ||| ||| Sbjct 36404322 CCCCCTTGATCAACATAGCGAGCAGTGTCATTGAAAACACGAAGCATTGGAACAATGCCA 36404263 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| |||||||||||||| ||||||||| || | || || |||||| || ||| Sbjct 36404262 TTGGATGTACCATTTGTTCCACGAATATAACTACCAGTGGCACGGATATTATGAAGAGAC 36404203 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || ||| ||| | |||||| ||||| ||||||||||| Sbjct 36404202 ACACCGATTCCTCCAGCTGATTTGCTGATCACAGCACACTCCTTCAAAGTGTCATATATG 36404143 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || || || ||||| |||| || || || |||||| Sbjct 36404142 CCTTCAATACTGTCATCCTTCATACAAACCAGGAAGCAGCTA 36404101 >seq1 Length=51465339 Score = 127 bits (140), Expect = 3e-24 Identities = 391/599 (65%), Gaps = 7/599 (1%) Strand=Plus/Plus Query 39595 CAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAAT 39654 |||||||| | |||| | || || ||||||||||| | |||||||||| ||| Sbjct 39365675 CAATAAATCATACAACA---AACACGCAAAGTCACAATGCAATCCCTCATCTCGCGAAAT 39365731 Query 39655 TAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGC 39714 | || || || | || | ||||||||| || || | ||| || | |||||| | || Sbjct 39365732 CAGCTCATTCGAGTAGGTCAATCCAGGCATCAGCCCTCTCTTCTTCAACCAAAACACCGC 39365791 Query 39715 AGCAAAAGAT-CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTC 39773 |||||| | || || || || || ||||| || ||||| || |||| ||||| Sbjct 39365792 -GCAAAAACTCCCCGAGAAAAAAATCCCTTCCACACAAGCAAACGCCACAATCCTCTCCG 39365850 Query 39774 CGTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAG 39833 || ||| | || |||||| || | ||||||| || ||| ||| ||||| | Sbjct 39365851 CGAAACACTCCCCTCCATCAATCCACCTCAGCGCCCAATTCGCCTTCCTCTCGACACACG 39365910 Query 39834 GCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCAC-TATCTTTAACATATGTA 39892 | || || || || || |||| | | || ||| ||| ||| || ||||| || Sbjct 39365911 GAATCGTCTCAATCGCCCTAAACAACCTACTCTTCTCA-CACGAATCCTTCACATACGTC 39365969 Query 39893 TCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAA 39952 || | | || ||||||||| || ||||| || || || ||||| ||||| || ||||| Sbjct 39365970 TCAAGAAGCAAACTATACATCTCCGAATGTATATTCTCGATCGCGATCTGGAAGCCGTAG 39366029 Query 39953 AAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTC 40012 || || || || | | || ||||| || || | || | ||| || | Sbjct 39366030 AACGCCCTAGCCTCCGCCACCTGGACCTCCTTCATGAACCTGCCGGCGAGATTCTCGAGC 39366089 Query 40013 ACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG 40072 || || || ||| |||||| || || || | || || | | || | ||| || | | Sbjct 39366090 ACGATGCCGTCAGAAGCGGCGAAGAAAGCGAGCACGTGAGTGACGAAGTGTTTCTCGTTG 39366149 Query 40073 GGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAA 40132 || || | | | | | | | |||| |||| ||| |||||||| || ||||| Sbjct 39366150 GGAGTTAGGGTTTGGAAATGAGCAGTGTCTTGCGATAAATCGACTTCTTCGGCGGTCCAG 39366209 Query 40133 AACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 || || ||||| || || |||||||| | ||| || | | ||||| || || || || Sbjct 39366210 AAGGAAGCCTCGGCTTTCTTGTACATTTCCCAGATTTGGGGGTATTGGATAGGGAACAT 39366268 Score = 113 bits (124), Expect = 6e-20 Identities = 130/173 (75%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 |||| |||||||||| | ||| || ||||| || | ||||||| |||| |||| || Sbjct 14682918 CTCTCTTTCATATTGGGCATACAGGTTCTCGAACTCTTGTCCCCAACAATCAGCCAAGCC 14682859 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTA--ACTCGTTTCATA 69606 ||| |||||||||||| | ||| ||||||||| ||| | ||| || | || |||| Sbjct 14682858 TGGAGCTTCATTTGGACAGAACAAGGACCACACACCAT--TGCTTTGTACCCTTTCCATA 14682801 Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTC 69659 |||||||| ||||||||||| || ||| | ||||| | || || |||||| Sbjct 14682800 AATAGATCAGGAATCCAAAGGGCATAAAATAAATCTCGAGCTCGATGTTCTTC 14682748 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 |||||||||||||| | || || ||||| |||||||||||| | || | || || | Sbjct 14681980 GTTCCCGCATTAAAAAGGGTTGGTGATGCATGAGTGAACCATCGCTGGGACATCAAATGG 14681921 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||| | ||||| ||||| | ||| || || |||||| | || || | ||||| Sbjct 14681920 TATGTCTTGATAGCAGATTCAACATCATCCTTATAAATTCCAACAGCAACTCTCATCAGA 14681861 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || || || | || || || | || ||||| ||||| ||| | ||||| Sbjct 14681860 ATGTGTTGTGGCCTCTCAACAACCTTCCCCTCAATCTTCAAAAGGTAGGATCTCTCCAGG 14681801 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || |||||||| || ||||| || Sbjct 14681800 GTTTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAAATTAT 14681754 >seq8 Length=31745509 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/124 (76%), Gaps = 4/124 (3%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || ||||||||||| || ||||||||||| ||| | ||| || || ||||| | Sbjct 25722102 GCAAGCAAAGTCACAATGAAGACCCTCATCTCTTGAAATAAGTTCATTTGAGAATGTCAA 25722161 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| | || | |||||| |||||||| |||||| |||||| | || || || Sbjct 25722162 ACCTGGCATCAATCCTCTCTTTTTAAGCCAAAAGATGGCA-CAAAAG---CTGAGAACAA 25722217 Query 39736 GATG 39739 |||| Sbjct 25722218 GATG 25722221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686867362226640