Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3 147 2e-30 >seq3 Length=50312079 Score = 147 bits (162), Expect = 2e-30 Identities = 385/582 (66%), Gaps = 4/582 (1%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||||||||| | | | || ||| | |||||||| ||||| |||| || || | Sbjct 34658487 TGTTCCCAATTCAATACCCTCAGATCTGGGAGATGTACAAGAAAGCCGAGGCCTCTTTCT 34658546 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCAC 43826 |||| || || ||||| ||||| || |||| | || ||| || || | | Sbjct 34658547 GGACCGCCGAGGAAGTCGATTTATCTCAAGATAATGTTCACTGGGAAGCTTTGACTTCTG 34658606 Query 43827 AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886 | || || || ||||| | ||| | || ||||| || || || || || || Sbjct 34658607 ATGAGAAGCACTTTATTACCCATGTTCTCGCTTTTTTCGCCGCTTCTGATGGCATTGTGC 34658666 Query 43887 ATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTT 43946 || ||||||| | ||||| | | || || || | | || || | ||||| Sbjct 34658667 TCGAGAATTTGGCCGGGAGGTTTATGAAGGAGGTGCAGGTGGCGGAGGCGAGGGCTTTTT 34658726 Query 43947 ATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATA 44006 |||||||||| ||||| ||||| |||||||||||||| ||||| ||| | || | || | Sbjct 34658727 ATGGGTTTCAGATTGCGATAGAGAATATTCATTCGGAGATGTATAGTTTGTTGTTGGAGA 34658786 Query 44007 CGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAAC-AGTACCT 44065 || || || ||| | | |||||| | ||||| | ||||| || || | | | | Sbjct 34658787 GTTATATTAAGGATTCGGAGGAGAAGGCGAGGTTGTTCAGGGCGATTGAGACGATTCCGT 34658846 Query 44066 GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGA 44125 | | | | | || || | ||||| | | ||||| || | || || |||| Sbjct 34658847 GTG-TCGAGAAGAAGGCCAAGTGGGCGATGAGGTGGATTGATGGAGGGGAGTCGTTTGCG 34658905 Query 44126 GAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTC-AGGATCGTTTGCGGC 44184 || | || | |||||||| ||||||||| ||||| || || ||| | | ||| || Sbjct 34658906 GAGAGGATTATTGCGTTTGCTTGTGTGGAAGGGATTTTTTTCTCGGGGAGCTTCTGC-GC 34658964 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 || |||||| | ||||| | || | ||||| || ||||| || || |||||| | || Sbjct 34658965 GATTTTTTGGCTGAAGAAGAGGGGGCTTATGCCCGGATTGACTTTCTCGAATGAGCTGAT 34659024 Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 | ||||| || | ||||| |||||||| || |||| Sbjct 34659025 TTCGAGGGATGAGGGTCTGCATTGTGATTTTGCATGTATGTT 34659066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397432622880130