Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 8e-16 seq3 95.1 1e-14 seq1 89.7 4e-13 seq2 86.0 5e-12 >seq6 Length=36610139 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || || ||||||||||| | | |||| ||||||| Sbjct 34079334 ACCAAATGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGACCGTCTTCC 34079275 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || ||||||| | ||| || || || || | ||||| || || | Sbjct 34079274 AGCTGCTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 34079215 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | | || | |||||| | | |||||||||||| || || | ||| Sbjct 34079214 ATCTTAGCTTTGACATTATCAATAGTGTCAGAGCTTTCAACTTCTAGGGTGATTGTCTTG 34079155 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || ||||| || ||||| Sbjct 34079154 CCAGTAAGTGTCTTAACAAATATCTGCAT 34079126 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 |||||||| | || || || || ||||||||||| || ||| | || || | || || Sbjct 34641554 ACCAAATGAAGGGTCGATTCCTTCTGAATATTGTAATCAGCTAAGGTA-CGACCATCCTC 34641496 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||||||||| || | ||||| | ||| ||||| || || | ||| ||||| || Sbjct 34641495 AAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCTGGAGGGATACCTTCTTTGTCTTG 34641436 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| || | | || | ||||| | | ||| || || ||||| || | || Sbjct 34641435 AATCTTAGCCTTGACATTGTCAATGGTGTCCGAGCTTTCTACCTCAAGAGTGATGGTCTT 34641376 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||||||||||||||| ||||| Sbjct 34641375 CCCAGTAAGAGTTTTCACAAAGATCTGCAT 34641346 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || || || |||||||| | | |||| ||||||| Sbjct 34641782 ACCAAATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGACCGTCTTCC 34641723 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || ||||||| | ||| || || || || | ||||| || || | Sbjct 34641722 AGCTGCTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 34641663 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | | || | |||||| | | |||||||||||| || || | || Sbjct 34641662 ATCTTAGCTTTAACATTATCAATAGTGTCAGAGCTTTCAACTTCTAGGGTGATGGTCTTT 34641603 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || |||||||| ||||| Sbjct 34641602 CCAGTAAGTGTCTTAACAAAGATCTGCAT 34641574 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 |||||||| | || || || || ||||||||||| || ||| | || ||| | || || Sbjct 34079106 ACCAAATGAAGGGTGGATTCCTTCTGAATATTGTAATCAGCTAAGGT-GCGACCATCCTC 34079048 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||||||||| || | || || | ||| ||||| || || | ||| || || || Sbjct 34079047 AAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGAGGGATACCTTCCTTGTCTTG 34078988 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| || | | || | ||||||| | ||| || || ||||| || | || Sbjct 34078987 AATCTTAGCCTTGACATTGTCAATGGTGTCTGAGCTTTCTACCTCAAGAGTGATGGTCTT 34078928 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| ||||||||||| ||||| Sbjct 34078927 CCCGGTAAGAGTCTTCACAAAGATCTGCAT 34078898 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||||| |||||||||||||||||||| || || |||| | ||||| || ||||| || Sbjct 34079778 GTAGACTCTTTTTGAATATTGTAGTCTGCAAGTG-TGCGGCCATCTTCAAGTTGTTTTCC 34079720 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | || || | ||| || || || || | |||||||| || ||||| ||| Sbjct 34079719 AGCAAATATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGAATCTTTGCTTT 34079660 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | |||||| | | || || ||||| || || | || || |||| ||| Sbjct 34079659 GACATTATCAATAGTGTCGGAGCTCTCCACCTCTAGCGTGATGGTCTTTCCTGTCAAAGT 34079600 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||||| || ||||| Sbjct 34079599 CTTCACAAAAATCTGCAT 34079582 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-G 27077 |||| ||||| | || | |||||||| | || || || || |||||||| ||||| | Sbjct 34406760 TGCCACCGCGGAGACGAAGAACCAAATGAAGGGTGGATTCCTTCTGAATATTATAGTCAG 34406701 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || | || | | || ||||||||||| || || | || || | ||| ||||| || Sbjct 34406700 CTAAAGTCCTTC-CATCCTCGAGCTGTTTGCCCGCAAAGATAAGCCTCTGCTGATCGGGA 34406642 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || || || || ||||| || | | || | ||||| | | |||| Sbjct 34406641 GGGATGCCTTCCTTGTCTTGAATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCTTTCA 34406582 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || ||||| | || || || ||||||||||||||||| ||||| Sbjct 34406581 ACCTCAAGGGTTATGGTCTTTCCGGTAAGAGTTTTCACAAAGATCTGCAT 34406532 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTCGAGCTGTTTACC 27109 ||||| |||||||||||||||||||| || || |||| | ||||| || ||||| || Sbjct 34642226 GTAGACTCTTTTTGAATATTGTAGTCTG-CAAGTGTGCGGCCATCTTCAAGTTGTTTTCC 34642168 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | || || | ||| || || || || | ||||| || || ||||| ||| Sbjct 34642167 AGCAAATATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTTTGCTTT 34642108 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | |||||| | | || || ||||| || || | || || |||| ||| Sbjct 34642107 GACATTATCAATAGTGTCAGAGCTCTCCACCTCTAGCGTGATGGTCTTTCCTGTCAAAGT 34642048 Query 27230 TTTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 34642047 CTTCACAAAGATCTGCAT 34642030 >seq3 Length=50312079 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||||||| | || || || || ||||| ||||| ||| || | | || | Sbjct 6143482 CGCAGAACCAAATGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGCCAAGGTCCGTCCA 6143423 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||||||||| || | ||||| | ||| || || || || | |||||| || Sbjct 6143422 TCCTCTAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTG 6143363 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| ||| | | || | || || | | ||| ||||||||||| ||| Sbjct 6143362 TCCTGGATCTTAGCTTTGACATTATCAATGGTATCAGAGCTTTCGACTTCTAGAGTGATA 6143303 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| || || || || ||||| || ||||| Sbjct 6143302 GTCTTGCCAGTAAGTGTCTTTACAAAAATCTGCAT 6143268 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| |||| || | |||| ||| | ||||| || |||||||||||||||||| | Sbjct 6144178 CCTCCACGCAGACGAAGCACCAGATGAAGGGTAGACTCCTTTTGAATATTGTAGTCGGCC 6144119 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || || ||||| || || || | || || | ||| || || || || Sbjct 6144118 AGTGTGCGGCCATCCTCCAGCTGCTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGG 6144059 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||| ||||| | || | ||||||| | ||||| Sbjct 6144058 ATGCCTTCCTTGTCCTGAATCTTTGCTTTCACATTATCAATGGTGTCTGAGCTCTCAACC 6143999 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||| || || |||||||| |||||||| || ||||| Sbjct 6143998 TCAAGTGTGATAGTCTTCCCAGTCAGAGTCTTCACAAATATCTGCAT 6143952 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | || | |||||||| | || || || || || || || ||||| Sbjct 6143724 TGCCACCGCGAAGGCGGAGCACCAAATGGAGGGTTGATTCCTTCTGGATGTTATAGTCAG 6143665 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | ||| | ||||||||||| || || || ||||||| | ||| || || || | Sbjct 6143664 CAAGGGTACGCCCATCTTCGAGCTGCTTGCCAGCAAAAATGAGCCTCTGCTGGTCTGGTG 6143605 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| || || |||||| ||| | | || | ||| || | ||||| Sbjct 6143604 GGATACCCTCCTTGTCCTGGATCTTAGCTTTGACATTATCAATAGTATCAGAACTTTCAA 6143545 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||||||| |||| || || || || || || || || || ||||| Sbjct 6143544 CTTCTAGAGTGATAGTCTTTCCGGTAAGGGTCTTTACGAAAATCTGCAT 6143496 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTC 27091 |||| |||||||| | || || || || ||||| ||||| || ||| | || || | Sbjct 6143254 CGCAGAACCAAATGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGCTAAGGTC-CGTCC 6143196 Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151 || || ||||| ||||| || | ||||| | ||| ||||| || || | ||| || || Sbjct 6143195 ATCCTCTAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGATCTGGAGGGATACCTTCCTT 6143136 Query 27152 ATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTAT 27211 || ||||| ||| | | || | |||||| | |||||| || || || || Sbjct 6143135 GTCTTGAATCTTCGCTTTGACATTGTCAATAGTGTCCGAACTTTCAACCTCGAGGGTGAT 6143076 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| || |||||||||||||| || ||||| Sbjct 6143075 TGTCTTGCCAGTAAGAGTTTTCACAAATATCTGCAT 6143040 >seq1 Length=51465339 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || ||||||||| || ||| || |||| ||||||||||| || Sbjct 30446257 GTGGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGC-CGTCCTCGAGCTGTTTTCC 30446315 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||| || || || || || || | || ||||| || ||| ||| ||| Sbjct 30446316 GGCGAAGATGAGGCGTTGCTGGTCGGGAGGGATGCCTTCTTTGTCTTGGATTTTGGCTTT 30446375 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | || ||| || || || || || | |||||| || || || Sbjct 30446376 GACATTGTCGATGGTGTCGGAGGATTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGT 30446435 Query 27230 TTTCACAAAGATTTGCAT 27247 ||| || ||||| ||||| Sbjct 30446436 TTTTACGAAGATCTGCAT 30446453 >seq2 Length=43913520 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||||||||| ||||| ||| |||| ||||| || ||||| || || | || || || Sbjct 39747276 TCTTCGAGCTGCTTACCAGCGAAAATAAGACGTTGCTGATCAGGAGGAATGCCTTCCTTG 39747217 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| ||| | | | || | ||||| | ||| || || | || || Sbjct 39747216 TCCTGGATCTTGGCTTTGACGTTGTCGATTGTGTCAGAACTTTCCACCTCCAAGGTGATG 39747157 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || |||||||||||||||||||| ||||| Sbjct 39747156 GTCTTTCCGGTCAGAGTTTTCACAAAGATCTGCAT 39747122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424909406686512