Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 122 1e-22 seq1 104 3e-17 seq5 96.9 4e-15 seq4 95.1 2e-14 >seq3 Length=50312079 Score = 122 bits (134), Expect = 1e-22 Identities = 151/206 (73%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || ||||||||||| | ||||| || ||||| ||||| | || ||||| || ||| Sbjct 34659045 TGCAGACCCTCATCCCTCGAAATCAGCTCATTCGAGAAAGTCAATCCGGGCATAAGCCCC 34658986 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 | |||||||| |||| |||| |||||||| ||| ||||| || || || |||||||| Sbjct 34658985 CTCTTCTTCAGCCAAAAAATCGCGCAGAAGCTCCCCGAGAAAAAAATCCCTTCCACACAA 34658926 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCC 122850 |||||||||| || | || || || || | | |||||| ||| |||| ||| Sbjct 34658925 GCAAACGCAATAATCCTCTCCGCAAACGA---CTCCCCTCCATCAATCCACCTCATCGCC 34658869 Query 122851 CATTTCGCCTTCTTCTCAATACATGG 122876 || || ||||||||||| | ||| || Sbjct 34658868 CACTTGGCCTTCTTCTCGACACACGG 34658843 Score = 109 bits (120), Expect = 7e-19 Identities = 244/364 (67%), Gaps = 2/364 (1%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| || || || | | ||||| || || || || | ||||| || || || Sbjct 10900662 ATCAAATCGGCCAGGTCTTAATAGGGCAGAGTCTAGAATGTCAGCACGATTTGTTGCTGC 10900721 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 ||| || | || ||||| | ||||| |||||||| || || || | || || | Sbjct 10900722 AATTACAATAACACCAGTGTTTCCTTCAAAACCATCCATTTCTGTCAGAAGCTGGTTCAG 10900781 Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGG-CATACCACCAGCACTGCGTTGCTTGCCCACCG 11630 ||| |||||||| |||||||| || | || ||||| | | |||| | || || | Sbjct 10900782 TGTCTGTTCTCTTTCATCATTCCCTCCTCCTAT-ACCAGTGCCTCTTTGCCTCCCAACAG 10900840 Query 11631 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 11690 ||||||| ||||||| || ||||| || || |||||| ||| | | || || | Sbjct 10900841 CATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCTTTGGCTTTCTTGAAAAGGT 10900900 Query 11691 CGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACT 11750 | || || | ||||| |||||||||||||| || ||||| | || |||| | Sbjct 10900901 CACGCACTCGAGACGCACCAACACCAACAAACATTTCAACAAACTCTGAACCAGAAATCG 10900960 Query 11751 GGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTAC 11810 || ||||| ||| || ||||| || || || ||| || ||||| || || || | Sbjct 10900961 AGAAAAATGGAACACCTGCCTCACCAGCAATAGCCTTGGCTAGAAGGGTTTTCCCAGTTC 10901020 Query 11811 CTGG 11814 |||| Sbjct 10901021 CTGG 10901024 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || ||||| ||||||||||||||||| ||||| || ||| | |||||||| | | Sbjct 36376508 GGGAGGGCAATTGATGCCAAATTGCATACAGCAGTTTCAGATGGACTAGTGTACTCAATA 36376449 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || ||||| | |||||||| || || || |||| |||| ||||| ||||| || Sbjct 36376448 ATCTCAGTACACAGGTTGGAACATTTGATTGTTCCCAGGTTCTGCTGGTTGCTCTTTCTG 36376389 Query 111350 TTGCACGCATCCT 111362 ||||| | ||||| Sbjct 36376388 TTGCAGGTATCCT 36376376 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || || ||||||||||||||||||||||| || ||| | |||||||| | | Sbjct 36405732 GGGAGTGCAATTGATGCCAAATTGCAAACAGCAGTTTCAGATGGACTCGTGTACTCAATA 36405673 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || ||||| | |||||||| || || || |||| |||| ||||| ||||| || Sbjct 36405672 ATCTCAGTACACAGGTTGGAACATTTGATTGTTCCCAGGTTCTGCTGGTTGCTCTTTCTG 36405613 Query 111350 TTGCACGCATCCT 111362 ||||| | ||||| Sbjct 36405612 TTGCAGGTATCCT 36405600 >seq1 Length=51465339 Score = 104 bits (114), Expect = 3e-17 Identities = 145/203 (71%), Gaps = 9/203 (4%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 ||||||||||| ||||| || ||||| ||| || | || ||||| || || | |||| Sbjct 39365715 CCCTCATCTCGCGAAATCAGCTCATTCGAGTAGGTCAATCCAGGCATCAGCCCTCTCTTC 39365774 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||||||||| | | ||||| || ||| ||||| || || || |||||||| |||||| Sbjct 39365775 TTCAACCAAAACACCGCGCAAAAACTCCCCGAGAAAAAAATCCCTTCCACACAAGCAAAC 39365834 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACT---TTGCATCAAACCATTTCATTGCCCAT 122853 || | || | || ||||| | ||| | |||||| ||| ||| ||||| Sbjct 39365835 GCCACAATCCTCTCCGCGAA------ACACTCCCCTCCATCAATCCACCTCAGCGCCCAA 39365888 Query 122854 TTCGCCTTCTTCTCAATACATGG 122876 ||||||||| |||| | ||| || Sbjct 39365889 TTCGCCTTCCTCTCGACACACGG 39365911 >seq5 Length=41956025 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/199 (72%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| ||||| | | |||||||| || || || | |||||||||| | Sbjct 7450843 AAACCCATCCATTTCGGTCAACAGCTGATTAATAGTCTGCTCCCGCTCATCATTTCCA-- 7450900 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | ||| | ||||| ||||||||||||||||| || ||||| Sbjct 7450901 CCTCCCATTCCAGCTCCTCTTTGTCTCCCCACAGCATCAATCTCATCAATAAACACAATG 7450960 Query 11657 CATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || || |||||| ||| | ||||| | ||| | ||| || ||||| |||| Sbjct 7450961 CAAGG--CGCTTTCGCCTTGGCCTTCTCAAACAAATCCCTAACTCTCGACGCACCAACAC 7451018 Query 11715 CAACAAACATCTCCACAAA 11733 |||| |||| |||||||| Sbjct 7451019 CAACGAACAATTCCACAAA 7451037 >seq4 Length=35924511 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || || |||||||| || | | || ||||| || || ||||||||||||||| | | Sbjct 26465303 AACCCGTCCATCTCTGTCAACAGCTGGTTAATAGTCTGCTCTCTCTCATCATTTCCA--C 26465360 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | ||| || || | | ||| | ||||| ||||||||||||||||| || ||||| | Sbjct 26465361 CTCCCATTCCTGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATGC 26465420 Query 11658 ATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 | || |||||| || | ||||| | ||| | || ||| |||||| ||||| Sbjct 26465421 AAGG--AGCTTTCGCCTTTGCCTTCTCAAACAAATCCCTCACTCTTGAGGCACCAACACC 26465478 Query 11716 AACAAACATCTCCACAAA 11733 |||||||| |||||||| Sbjct 26465479 AACAAACAATTCCACAAA 26465496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627994113969600