Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 131 2e-25 seq1 102 1e-16 >seq3 Length=50312079 Score = 131 bits (144), Expect = 2e-25 Identities = 162/221 (73%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || |||||||| || | || || || ||||||||||| || || ||||| || ||| Sbjct 34659045 TGCAGACCCTCATCCCTCGAAATCAGCTCATTCGAGAAAGTCAATCCGGGCATAAGCCCC 34658986 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 | |||||||| ||| |||||||| || || || ||||| || ||||| |||||||| Sbjct 34658985 CTCTTCTTCAGCCAAAAAATCGCGCAGAAGCTCCCCGAGAAAAAAATCCCTTCCACACAA 34658926 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 130207 || ||||||| | | ||| ||||| || | | ||||| |||| |||||||| Sbjct 34658925 GCAAACGCAATAATCCTCTCCGCAAACGA---CTCCCCTCCATCAATCCACCTCATCGCC 34658869 Query 130208 CACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 |||| ||||| ||||||| |||||| | |||| ||||| Sbjct 34658868 CACTTGGCCTTCTTCTCGACACACGGAATCGTCTCAATCGC 34658828 >seq1 Length=51465339 Score = 102 bits (112), Expect = 1e-16 Identities = 152/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 ||||| || || || || || ||||||||| || || || ||||| || || | |||| Sbjct 39365715 CCCTCATCTCGCGAAATCAGCTCATTCGAGTAGGTCAATCCAGGCATCAGCCCTCTCTTC 39365774 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 |||||||| || | ||| ||||| || ||||| || ||||| |||||||| || ||| Sbjct 39365775 TTCAACCAAAACACCGCGCAAAAACTCCCCGAGAAAAAAATCCCTTCCACACAAGCAAAC 39365834 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 || | | | ||| || | | | | | ||||| |||| ||| |||||| | | Sbjct 39365835 GCCACAATCCTCTCCGC---GAAACACTCCCCTCCATCAATCCACCTCAGCGCCCAATTC 39365891 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 ||||| |||||| |||||| | |||| ||||| Sbjct 39365892 GCCTTCCTCTCGACACACGGAATCGTCTCAATCGC 39365926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618397892896560