Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 125 8e-24 seq5 102 1e-16 seq4 96.9 4e-15 >seq3 Length=50312079 Score = 125 bits (138), Expect = 8e-24 Identities = 236/337 (70%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9614 || || || ||| | ||||| || || || || |||| || ||| |||||| || ||| Sbjct 10900693 TCTAGAATGTCAGCACGATTTGTTGCTGCAATTACAATAACACCAGTGTTTCCTT--CAA 10900750 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GGC 9673 |||||||||| ||||||| ||| ||||| | || ||||| | |||||||||| || | Sbjct 10900751 AACCATCCATTTCTGTCAGAAGCTGGTTCAGTGTCTGTTCTCTTTCATCATTCCCTCCTC 10900810 Query 9674 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 || ||||| | | |||| | || || |||||||| ||||||| || || ||||| Sbjct 10900811 CTA-TACCAGTGCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAATACAATGCAG 10900869 Query 9734 GGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || |||||| || ||| ||| || || || || || || || |||||||| Sbjct 10900870 GGAGCATTTTCTTTGGCTTTCTTGAAA-AGGTCACGCACTCGAGACGCACCAACACCAAC 10900928 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 |||||| || ||||| | || | ||| || | || || || ||| | ||||| | Sbjct 10900929 AAACATTTCAACAAACTCTGAACCAGAA-ATCGAGAAAAATGGAACACCTGCCTCACCAG 10900987 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 |||| || ||| ||||| || || || || ||||| Sbjct 10900988 CAATAGCCTTGGCTAGAAGGGTTTTCCCAGTTCCTGG 10901024 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 104139 GAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATC-TTCAACGG 104197 |||||| |||| || ||| ||||| | ||||||||||||| | ||| | || || || Sbjct 36403687 GAGACTTTGACTATGATTACTTTGGCTTTAAAACCCTTGAGAGGTCCTACCTTTTAAAGG 36403746 Query 104198 CTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATT 104257 | | || ||| | || | ||||| | ||| | ||| | || || | || ||| Sbjct 36403747 TGCAAGGGAAGGTTG-TTGAGAGGCCACAACATATGCTGATGAGAGTTGCTGTTGGGATT 36403805 Query 104258 CATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 104317 || ||| || |||||||||| | ||||||| | ||||||||| | |||| Sbjct 36403806 CACAAGGATGATATTGATTCTGCTATTAAGACATATCATCTAATGTCCCAACGATGGTTC 36403865 Query 104318 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 | ||| || |||||||||| |||||||| || || || || || ||| Sbjct 36403866 ACTCATGCGTCACCAACCCTTTTCAATGCGGGAACCCCGAGGCCTCAA 36403913 >seq5 Length=41956025 Score = 102 bits (112), Expect = 1e-16 Identities = 245/367 (67%), Gaps = 8/367 (2%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| | ||||| | || | ||| |||||| | |||| | || ||||| || Sbjct 7450756 ATCAAACCTTCCTGGCCTTAGCAATGCGGAATCAAGAACATCAGGTCTGTTTGTCGCAGC 7450815 Query 9586 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645 | |||| || || | | | | ||| |||||||| || ||||| || || ||||| Sbjct 7450816 CAACACAATAACCCCAGAATTACCAGAAAACCCATCCATTTCGGTCAACAGCTGATTAAT 7450875 Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACG 9703 ||| || ||||| |||||||| | | | ||| ||||| | | ||| | ||||| Sbjct 7450876 AGTCTGCTCCCGCTCATCATTTCCA--CCTCCCATTCCAGCTCCTCTTTGTCTCCCCACA 7450933 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAAAGA 9761 ||||||||||||||||| || || ||||| || |||||| | || ||||| | Sbjct 7450934 GCATCAATCTCATCAATAAACACAATGCAAGG--CGCTTTCGCCTTGGCCTTCTCAAACA 7450991 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 ||||| || | | || || |||||||| |||| |||||||| | | || | || Sbjct 7450992 AATCCCTAACTCTCGACGCACCAACACCAACGAACAATTCCACAAACTCAGAAGCAGCAC 7451051 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || || || ||||| |||| || | || | ||||||||| |||| Sbjct 7451052 ACGAAAAAAATGGTGTGCCAGCCTCACCTGCAACCGCCCTAGCCAAAAGAGTCTTCCCCG 7451111 Query 9882 TACCTGG 9888 | ||||| Sbjct 7451112 TCCCTGG 7451118 >seq4 Length=35924511 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/200 (73%), Gaps = 12/200 (6%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || || |||||||||||||| || ||||||||||| || || | |||||||| | | Sbjct 26465303 AACCCGTCCATCTCTGTCAACAGCTGGTTAATAGTCTGCTCTCTCTCATCATTTCC--AC 26465360 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | ||| || || | | ||| | ||||| ||||||||||||||||| || || |||| Sbjct 26465361 CTCCCATTCCTGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATGC 26465420 Query 9732 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTT--GGCGCCCACA 9787 | || |||||| | || ||||| | ||||| ||| ||| ||| || ||| Sbjct 26465421 AAGG--AGCTTTCGCCTTTGCCTTCTCAAACAAATCCC--TCACTCTTGAGGCACCAACA 26465476 Query 9788 CCAACAAACATCTCCACAAA 9807 |||||||||| |||||||| Sbjct 26465477 CCAACAAACAATTCCACAAA 26465496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583225614792240