Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3 111 2e-19 >seq3 Length=50312079 Score = 111 bits (122), Expect = 2e-19 Identities = 282/429 (66%), Gaps = 0/429 (0%) Strand=Plus/Plus Query 59703 GTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTT 59762 || || || || ||||| || |||||| |||||| | || ||| | | | || ||| Sbjct 34658630 GTTCTCGCTTTTTTCGCCGCTTCTGATGGCATTGTGCTCGAGAATTTGGCCGGGAGGTTT 34658689 Query 59763 TCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAG 59822 ||||| || ||| | || ||||| || | || || | || |||| | ||| Sbjct 34658690 ATGAAGGAGGTGCAGGTGGCGGAGGCGAGGGCTTTTTATGGGTTTCAGATTGCGATAGAG 34658749 Query 59823 TCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAG 59882 ||| || || |||| ||| | || | || | | | |||||| |||| ||| Sbjct 34658750 AATATTCATTCGGAGATGTATAGTTTGTTGTTGGAGAGTTATATTAAGGATTCGGAGGAG 34658809 Query 59883 AAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGG 59942 ||||| | ||||| | || || |||||| || || | | || || | ||| Sbjct 34658810 AAGGCGAGGTTGTTCAGGGCGATTGAGACGATTCCGTGTGTCGAGAAGAAGGCCAAGTGG 34658869 Query 59943 GCCATGCAGTGGATGAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGC 60002 || ||| |||||| | || | || ||||| | | | || || ||||| || Sbjct 34658870 GCGATGAGGTGGATTGATGGAGGGGAGTCGTTTGCGGAGAGGATTATTGCGTTTGCTTGT 34658929 Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 |||||||| || || ||||| || ||||| || ||||| ||||| || ||| | || Sbjct 34658930 GTGGAAGGGATTTTTTTCTCGGGGAGCTTCTGCGCGATTTTTTGGCTGAAGAAGAGGGGG 34658989 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAG 60122 || ||||| || ||| |||||| || ||||||||||| |||| ||||| || ||| Sbjct 34658990 CTTATGCCCGGATTGACTTTCTCGAATGAGCTGATTTCGAGGGATGAGGGTCTGCATTGT 34659049 Query 60123 GAGTTTGCA 60131 || |||||| Sbjct 34659050 GATTTTGCA 34659058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548491710241440