Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 7e-16 seq6 91.5 1e-13 seq15 82.4 5e-11 seq1 82.4 5e-11 >seq3 Length=50312079 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||| || || |||||||| || ||| || | || ||||||||| | Sbjct 6143267 AATGCAGATTTTTGTAAAGACACTTACTGGCAAGACTATCACTCTAGAAGTCGAAAGCTC 6143326 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| |||||| || || ||||| || ||| | || || Sbjct 6143327 TGATACCATTGATAAT--GTCAAAGCTAAGATCCAGGACAAGGAGGGTATCCCACCAGAC 6143384 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || ||||| || ||||| | || || | ||| | |||| |||||||| Sbjct 6143385 CAGCAGAGGCTCATCTTTGCTGGTAAACAGCTAGAGGATGGACGGACCTTGGCCGATTAC 6143444 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || || ||| || | ||||||||| ||||| | ||||| || Sbjct 6143445 AACATTCAGAAGGAGTCGACCCTTCATTTGGTTCTGCGTCTACGTGGGGG 6143494 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || ||||| |||||||| ||||| |||| || ||||| | Sbjct 6143724 ATGCAAATCTTTGTTAAGACTCTCACTGGGAAGACGATTACCCTTGAAGTAGAAAGTTCT 6143783 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || ||| ||||| ||||| || || |||| || | Sbjct 6143784 GATACAATTGACAAT--GTGAAAGCGAAAATTCAAGACAAGGAGGGAATTCCCCCAGACC 6143841 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| |||||||| || || |||||||| || | | | ||| | ||||||| Sbjct 6143842 AGCAGAGGTTGATTTTTGCTGGTAAGCAATTGGAGGATGGTAGGACATTGGCTGATTACA 6143901 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| ||||| || |||| | ||| |||| ||| | ||| | || ||| Sbjct 6143902 ACATTCAAAAGGAATCCACTCTTCATCTGGTATTGAGGTTGAGAGGTGGC 6143951 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||||||||||| || || || | || || ||||| | Sbjct 6143040 ATGCAGATATTTGTGAAAACTCTTACTGGCAAGACAATCACCCTCGAGGTTGAAAGTTCG 6143099 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| |||||| || || ||||| |||||| | || || | Sbjct 6143100 GACACTATTGACAAT--GTCAAAGCGAAGATTCAAGACAAGGAAGGTATCCCTCCAGATC 6143157 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || || || | || || | ||| | ||| | ||||||| Sbjct 6143158 AGCAGAGGCTCATCTTTGCTGGTAAGCAGCTAGAGGATGGACGGACCTTAGCTGATTACA 6143217 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || ||| || | ||||||||| ||||| | ||||| || Sbjct 6143218 ACATTCAGAAGGAGTCGACCCTTCATTTGGTTCTGCGTCTACGTGGGGG 6143266 >seq6 Length=36610139 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| || || |||||||| || || || | || || || ||| | Sbjct 34079353 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACCTTGGAAGTAGAGAGCTC 34079412 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| |||| ||||| || || ||| || ||||| || || |||| || Sbjct 34079413 CGATACGATCGACAAT--GTTAAGGCAAAGATCCAAGACAAGGAGGGAATTCCTCCAGAT 34079470 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| || ||||| || || || ||||| |||| | | | |||| | |||||| Sbjct 34079471 CAGCAGAGGTTGATATTTGCTGGGAAGCAGTTGGAGGACGGAAGGACCTTGGCAGATTAC 34079530 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 ||||| || || || |||| | |||||||| ||| Sbjct 34079531 AACATTCAGAAGGAATCCACTCTTCATTTGGTATTG 34079566 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||||||||||||||| || || |||| || |||||| | Sbjct 34641346 ATGCAGATCTTTGTGAAAACTCTTACTGGGAAGACCATCACTCTTGAGGTAGAAAGCTCG 34641405 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| ||||| || || |||||||||||| | || || | Sbjct 34641406 GACACCATTGACAAT--GTCAAGGCTAAGATTCAAGACAAAGAAGGTATCCCTCCAGATC 34641463 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || ||||| | || || | || | ||| | ||||||| Sbjct 34641464 AGCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGTACCTTAGCTGATTACA 34641523 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | || || || || || | ||||||||| | ||| | ||||| ||| Sbjct 34641524 ATATTCAGAAGGAATCGACCCTTCATTTGGTTCTTCGTCTACGTGGTGGC 34641573 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || |||||||| || ||||| | || || || ||| | Sbjct 34641802 ATGCAAATCTTTGTCAAGACGCTTACTGGAAAGACAATTACCTTGGAGGTAGAGAGCTCT 34641861 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || || ||| || |||||||| || |||| || | Sbjct 34641862 GATACAATTGACAAT--GTTAAGGCAAAGATCCAAGACAAAGAGGGAATTCCTCCAGATC 34641919 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| || || || ||||| |||| | | | ||| | ||||||| Sbjct 34641920 AGCAGAGGTTGATATTTGCTGGGAAGCAGTTGGAGGACGGAAGGACATTGGCAGATTACA 34641979 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| || ||| | |||||||| ||| Sbjct 34641980 ACATTCAAAAGGAATCCACACTTCATTTGGTATTG 34642014 >seq15 Length=668940 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| ||||| || ||||| || || || ||||| || || |||||||| Sbjct 334784 GACAAGGAAGGTATTCCGCCAGACCAGCAGCGTTTGATCTTTGCTGGTAAGCAATTGGAG 334843 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | | || | |||||||||||||| || ||| ||| ||| | || ||| Sbjct 334844 GACGGCAGGACCCTGGCTGATTACAACATCCAGAAGGAGTCCACACACCATCTTGTGTTG 334903 Query 28003 CGTTTGCGTGGCGGC 28017 ||| | ||||| ||| Sbjct 334904 CGTCTTCGTGGTGGC 334918 >seq1 Length=51465339 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/236 (68%), Gaps = 18/236 (8%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| || || || || || || |||| ||||||||| || Sbjct 45560333 ATGCAAATCTTTGTGAAAACCCTCACCGGAAAGACCATCACCCTTGAGGTCGAAAGCTCC 45560392 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| ||||| ||||| || || ||||| |||| | Sbjct 45560393 GAC-----ACAATCGACAACGTCAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCAG 45560447 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG----CTTGTCC 27960 | ||||| |||| || || || || || ||| | || |||| |||| |||| || Sbjct 45560448 ACCAGCAGAGGTTGATCTTCGCTGGCAAGCAACTTGAAGACG---GCAGGACCCTTG-CC 45560503 Query 27961 GATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| ||||| || ||| ||| | |||||||| | ||| | ||||| || Sbjct 45560504 GACTACAATATCCAGAAGGAGTCAACTCTCCATTTGGTCCTCCGTCTTCGTGGTGG 45560559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355841469285702