Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq7 93.3 4e-14 seq1 89.7 4e-13 seq3 86.0 5e-12 >seq6 Length=36610139 Score = 107 bits (118), Expect = 2e-18 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || || ||||||||| ||||| || || |||||||| || | || || Sbjct 34079791 CACAAGATGGAGGGTAGACTCTTTTTGAATATTGTAGTCTGCAAGTGTGCGGCCATCTTC 34079732 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||| ||||| || ||||||||||| | ||||||||| |||||| | || |||||||| | Sbjct 34079731 AAGTTGTTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGG-ATGCCCTCTTTGT-CT 34079674 Query 39194 TGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| | | || ||||| | | | || ||| |||||| || | |||||| | Sbjct 34079673 TGAATCTTTGCTTTGACATTATCAATAGTGTCGGAGCTCTCCACCTCTAGCGTGATGGTC 34079614 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| |||| || || ||||| || ||||| Sbjct 34079613 TTTCCTGTCAAAGTCTTCACAAAAATCTGCAT 34079582 Score = 104 bits (114), Expect = 2e-17 Identities = 156/215 (73%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || || ||||||||| ||||| || || |||||||| || | || || Sbjct 34642239 CACAAGATGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGCAAGTGTGCGGCCATCTTC 34642180 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||| ||||| || ||||||||||| | ||||||||| |||||| | || ||| |||| | Sbjct 34642179 AAGTTGTTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGG-ATGCCCTCCTTGT-CT 34642122 Query 39194 TGATTTTCTG-TTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATA 39249 ||| | | || ||||| | | | || || ||| |||||| || | |||||| Sbjct 34642121 TGAATCTTTGCTTTGACATTATCAATAGTGTCAGAGCT---CTCCACCTCTAGCGTGATG 34642065 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| |||| || || |||||||| ||||| Sbjct 34642064 GTCTTTCCTGTCAAAGTCTTCACAAAGATCTGCAT 34642030 >seq7 Length=36358036 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || ||||| || |||| |||| || ||||| Sbjct 14364751 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGC 14364692 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || || ||||||||||| | || | || |||||||| || || Sbjct 14364691 TTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCTTTGTCTTGAATCTTG 14364632 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 ||||| | | | || ||| || ||||| |||| |||||| |||| || || Sbjct 14364631 GCTTTGACATTGTCGATTGTGTCGGAGGATTCCACCTCCAGGGTGATAGTTTTGCCGGTG 14364572 Query 39262 AGCGTTTTAACAAAGATTTGCATCTT 39287 || ||||| || ||||| |||||||| Sbjct 14364571 AGGGTTTTCACGAAGATCTGCATCTT 14364546 >seq1 Length=51465339 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || || ||| || || ||||| || |||||||| || | |||| ||| Sbjct 45560541 ACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCTGCCGTCTTCA 45560482 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 || || ||||| || || || | | ||||||||| | ||| | || || || ||| | Sbjct 45560481 AGTTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGG 45560422 Query 39196 ATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||||| |||| ||| | | | || ||| || || || | ||||| | || Sbjct 45560421 ATTTTGGCCTTGA-CGTTGTCGATTGTGTCGGAGCTTTCGACCTCAAGGGTGATGGTCTT 45560363 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 ||| || || ||||| |||||||||||||||| ||| Sbjct 45560362 TCCGGTGAGGGTTTTCACAAAGATTTGCATCTGTAC 45560327 >seq3 Length=50312079 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/215 (71%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || || ||| ||||| ||||| || ||||| ||||| || | || || Sbjct 6144161 CACCAGATGAAGGGTAGACTCCTTTTGAATATTGTAGTCGGCCAGTGTGCGGCCATCCTC 6144102 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||| || || ||||||||||| | ||||||||| |||||| | || || |||||| Sbjct 6144101 CAGCTGCTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGG-ATGCCTTCCTTGTCC- 6144044 Query 39194 TGATTTTCTG-TTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATA 39249 ||| | | || ||| | | | | || || ||| ||| || || | |||||| Sbjct 6144043 TGAATCTTTGCTTTCACATTATCAATGGTGTCTGAGCT---CTCAACCTCAAGTGTGATA 6143987 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || ||||| || || ||||| || ||||| Sbjct 6143986 GTCTTCCCAGTCAGAGTCTTCACAAATATCTGCAT 6143952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429520335470138