Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3 174 1e-38 seq1 140 3e-28 seq8 82.4 7e-11 >seq3 Length=50312079 Score = 174 bits (192), Expect = 1e-38 Identities = 392/584 (67%), Gaps = 5/584 (1%) Strand=Plus/Minus Query 4537 CAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAG 4596 || |||| | ||| |||||||||||||||| ||| || || || |||||| || || | Sbjct 34659071 CATACAACATACATGCAAAATCACAATGCAGACCCTCATCCCTCGAAATCAGCTCATTCG 34659012 Query 4597 AAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACC 4656 | || || ||||||||||| | || ||||| || |||||||| || ||| || || Sbjct 34659011 AGAAAGTCAATCCGGGCATAAGCCCCCTCTTCTTCAGCCAAAAAATCGCGCAGAAGCTCC 34658952 Query 4657 CAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACC-CGAACGAGCTG 4715 | || || || || ||||| || |||||||| | ||||| || | ||||| || Sbjct 34658951 CCGAGAAAAAAATCCCTTCCACACAAGCAAACGC-AATAATCCTCTCCGCAAACGA-CTC 34658894 Query 4716 GCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTG 4775 | | | | |||||| | | ||||| || || || |||| || |||||||| || Sbjct 34658893 CCCT--CCATCAATCCACCTCATCGCCCACTTGGCCTTCTTCTCGACACACGGAATCGTC 34658836 Query 4776 TATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGT 4835 | || || | || || | || || | || | ||||||| | || | | Sbjct 34658835 TCAATCGCCCTGAACAACCTCGCCTTCTCCTCCGAATCCTTAATATAACTCTCCAACAAC 34658776 Query 4836 AGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTA 4895 | |||||||| || ||||| ||||| ||||| ||||||||||| || ||||| || Sbjct 34658775 AAACTATACATCTCCGAATGAATATTCTCTATCGCAATCTGAAACCCATAAAAAGCCCTC 34658716 Query 4896 GCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCG 4955 || || | || || || || || ||| || | | || || ||| || || || Sbjct 34658715 GCCTCCGCCACCTGCACCTCCTTCATAAACCTCCCGGCCAAATTCTCGAGCACAATGCCA 34658656 Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT 5015 ||| || || ||||| || | |||||| | ||||||| || || |||| | | Sbjct 34658655 TCAGAAGCGGCGAAAAAAGCGAGAACATGGGTAATAAAGTGCTTCTCATCAGAAGTCAAA 34658596 Query 5016 TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 || |||||| ||||| || |||||| ||||| || | ||||| || || || Sbjct 34658595 GCTTCCCAGTGAACATTATCTTGAGATAAATCGACTTCCTCGGCGGTCCAGAAAGAGGCC 34658536 Query 5076 TCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 || ||||| |||||||| ||| || | ||| || ||||| || Sbjct 34658535 TCGGCTTTCTTGTACATCTCCCAGATCTGAGGGTATTGAATTGG 34658492 >seq1 Length=51465339 Score = 140 bits (154), Expect = 3e-28 Identities = 368/557 (66%), Gaps = 5/557 (1%) Strand=Plus/Plus Query 4537 CAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAG 4596 || |||| ||||||||||| ||||||||||| || || |||| |||||| || || | Sbjct 39365683 CATACAACAAACACGCAAAGTCACAATGCAATCCCTCATCTCGCGAAATCAGCTCATTCG 39365742 Query 4597 AAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACC 4656 | | || ||||| ||||| | |||||||| || | |||||| | ||| ||| || Sbjct 39365743 AGTAGGTCAATCCAGGCATCAGCCCTCTCTTCTTCAACCAAAACACCGCGCAAAAACTCC 39365802 Query 4657 CAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACC-CGAACGAGCTG 4715 | || || || || ||||| || |||||||| || |||| || |||| | || Sbjct 39365803 CCGAGAAAAAAATCCCTTCCACACAAGCAAACGCCAC-AATCCTCTCCGCGAAACA-CTC 39365860 Query 4716 GCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTG 4775 | | | | |||||| | | ||||| || || || ||| || |||||||| || Sbjct 39365861 CCCT--CCATCAATCCACCTCAGCGCCCAATTCGCCTTCCTCTCGACACACGGAATCGTC 39365918 Query 4776 TATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGT 4835 | || || |||| || |||| || ||| | | || | | ||| || || | || Sbjct 39365919 TCAATCGCCCTAAACAACCTACTCTTCTCACACGAATCCTTCACATACGTCTCAAGAAGC 39365978 Query 4836 AGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTA 4895 | |||||||| || ||||||||||| || || || ||||| || ||||| || ||| Sbjct 39365979 AAACTATACATCTCCGAATGTATATTCTCGATCGCGATCTGGAAGCCGTAGAACGCCCTA 39366038 Query 4896 GCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCG 4955 || || | || || || || || || || | | | || ||| || || ||| Sbjct 39366039 GCCTCCGCCACCTGGACCTCCTTCATGAACCTGCCGGCGAGATTCTCGAGCACGATGCCG 39366098 Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT 5015 ||| || || || || || | || |||| | |||| | |||| || | || Sbjct 39366099 TCAGAAGCGGCGAAGAAAGCGAGCACGTGAGTGACGAAGTGTTTCTCGTTGGGAGTTAGG 39366158 Query 5016 TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 ||| | || | |||| | |||||| |||||||| | ||||| || || || Sbjct 39366159 GTTTGGAAATGAGCAGTGTCTTGCGATAAATCGACTTCTTCGGCGGTCCAGAAGGAAGCC 39366218 Query 5076 TCCGCTTTTTTGTACAT 5092 || ||||| |||||||| Sbjct 39366219 TCGGCTTTCTTGTACAT 39366235 >seq8 Length=31745509 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| |||||||| | ||| || ||||| ||| ||||| || || || || || Sbjct 25722103 CAAGCAAAGTCACAATGAAGACCCTCATCTCTTGAAATAAGTTCATTTGAGAATGTCAAA 25722162 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGC 4645 || ||||| || |||||||||||||||||||| || || Sbjct 25722163 CCTGGCATCAATCCTCTCTTTTTAAGCCAAAAGATGGC 25722200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427024482277058