Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3 232 9e-56 seq1 109 8e-19 >seq3 Length=50312079 Score = 232 bits (256), Expect = 9e-56 Identities = 583/875 (67%), Gaps = 16/875 (2%) Strand=Plus/Minus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 || ||||| || || || || ||||| || |||||||| || || | ||| || || Sbjct 34659351 TTCTGATACTCCCCAACTCGCTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 34659292 Query 47910 TCCATAAAATCAAATGGATTAACTGCA--TTATAAAtttttttAAATCCTAATTCTGAAA 47967 ||||| ||||||||||||| ||||| ||||| || || | | || || || | Sbjct 34659291 TCCATCCAATCAAATGGATT--CTGCACATTATACATCTTCCCATACCCCAACGCTCCCA 34659234 Query 47968 TCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAA 48027 || ||||| || || || | ||||| |||||| || | |||||| || | | Sbjct 34659233 ACAACCTATCCGCCACAAACTTAATATACTGACTCATCAAATCCCCATTCATCCCAACCA 34659174 Query 48028 GTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTA 48087 | || | ||| || || |||||| || || || |||||| ||| | Sbjct 34659173 AAGCACACGGCAAAGCATCACAAACAAACTCCCTCTCAATCTCAACCGCATCCGCTACAA 34659114 Query 48088 TCGATGTTACCGTTTCCTCACTTGG-TGGATAC--AACAAATGTTTAAACATTAAACATG 48144 || | ||| |||||||| || | || | ||||||| | ||||| ||||| Sbjct 34659113 TCCCCTTAACCCGCTCCTCACTCGGCTTCATCCTCAACAAATCATACAACAT---ACATG 34659057 Query 48145 CAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGG 48204 ||||||||||||| ||||| ||||| || ||| | || || || || || | |||| Sbjct 34659056 CAAAATCACAATGCAGACCCTCATCCCTCGAAATCAGCTCATTCGAGAAAGTCAATCCGG 34658997 Query 48205 GCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA-GAAAAGAATATG 48263 |||| || || | || || |||||||| || || || ||| ||| || || || || Sbjct 34658996 GCATAAGCCCCCTCTTCTTCAGCCAAAAAATCGC-GCAGAAGCTCCCCGAGAAAAAAATC 34658938 Query 48264 CCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT--ATCC 48321 ||||| || ||||| || ||| || ||||||| || | || | | | |||| Sbjct 34658937 CCTTCCACACAAGCAAACGCAATAA-TC-CTCTCCGCAAACGACTCCCCTCCATCAATCC 34658880 Query 48322 ACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 48381 ||| ||||| | |||||||||| ||||| || || || || || || | || | Sbjct 34658879 ACCTCATCGCCCACTTGGCCTTCTTCTCGACACACGGAATCGTCTCAATCGCCCTGAACA 34658820 Query 48382 GAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGG 48441 || || | ||| |||| ||| | || | || | ||||||||| || | Sbjct 34658819 ACCTCGCCTTCTCCTCCGAATCCTTAATATAACTCTCCAACAACAAACTATACATCTCCG 34658760 Query 48442 AGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTA 48501 | |||||||| || || || |||||||| || |||||| ||||| || | | ||| | Sbjct 34658759 AATGAATATTCTCTATCGCAATCTGAAACCCATAAAAAGCCCTCGCCTCCGCCACCTGCA 34658700 Query 48502 CCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAA 48561 ||||| | ||| | | ||||||||||| || || |||||| ||| || |||| Sbjct 34658699 CCTCCTTCATAAACCTCCCGGCCAAATTCTCGAGCACAATGCCATCAGAAGCGGCGAAAA 34658640 Query 48562 ATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGA 48621 | || | ||||| ||||||| | || || | ||||||| | ||||| | Sbjct 34658639 AAGCGAGAACATGGGTAATAAAGTGCTTCTCATCAGAAGTCAAAGCTTCCCAGTGAACAT 34658580 Query 48622 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACA 48681 |||||| |||| ||| ||||| || || ||||| || || ||||| ||||| || |||| Sbjct 34658579 TATCTTGAGATAAATCGACTTCCTCGGCGGTCCAGAAAGAGGCCTCGGCTTTCTTGTACA 34658520 Query 48682 TATTCCATATATCACTGTATTGGATTGGGAAAATA 48716 | | ||| || | | |||||| |||||||| ||| Sbjct 34658519 TCTCCCAGATCTGAGGGTATTGAATTGGGAACATA 34658485 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || ||||| | ||| | || |||| ||| |||| | | |||||||| |||||| Sbjct 36375077 ACCCCCTTGATCAACATAGCGAGCAGTGTCATTGAAAACACGAAGCATTGGAACAATACC 36375018 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| |||||||||||| ||||||||| ||| | || || |||||| || || Sbjct 36375017 ATTGGATGTACCATTTGTTCCACGAATATAACTACCAGTAGCACGGATATTATGAAGAGA 36374958 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || || || | ||| || |||||||| || || || Sbjct 36374957 CACACCGATTCCTCCAGCTGATTTGCTGATCACAGCACACTCCTTCAATGTGTCATATAT 36374898 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || |||||||||||| |||| || || || |||||| Sbjct 36374897 GCCTTCAATACTGTCATCCTTCATACAAACCAGGAAGCAGCTA 36374855 Score = 105 bits (116), Expect = 9e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || ||||| | ||| | || |||| ||| |||| | | |||||||| ||| || Sbjct 36404323 ACCCCCTTGATCAACATAGCGAGCAGTGTCATTGAAAACACGAAGCATTGGAACAATGCC 36404264 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| |||||||||||| ||||||||| ||| | || || |||||| || || Sbjct 36404263 ATTGGATGTACCATTTGTTCCACGAATATAACTACCAGTGGCACGGATATTATGAAGAGA 36404204 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || || || | ||| || ||||| || || || || Sbjct 36404203 CACACCGATTCCTCCAGCTGATTTGCTGATCACAGCACACTCCTTCAAAGTGTCATATAT 36404144 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || |||||||||||| |||| || || || |||||| Sbjct 36404143 GCCTTCAATACTGTCATCCTTCATACAAACCAGGAAGCAGCTA 36404101 >seq1 Length=51465339 Score = 109 bits (120), Expect = 8e-19 Identities = 129/172 (75%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 ||||||||||||||| | ||| || || || || | ||||||| |||| |||| || Sbjct 14682918 CTCTCTTTCATATTGGGCATACAGGTTCTCGAACTCTTGTCCCCAACAATCAGCCAAGCC 14682859 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 || ||||||||| || | ||| ||||| |||||| | | || || | || ||||| Sbjct 14682858 TGGAGCTTCATTTGGACAGAACAAGGACCACACACCAT-TGCTTTGTACCCTTTCCATAA 14682800 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 | |||||||| ||||| || ||| ||||| |||||| | || ||||||||| Sbjct 14682799 ATAGATCAGGAATCCAAAGGGCATAAAATAAATCTCGAGCTCGATGTTCTTC 14682748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694626894104640