Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3 219 6e-52 seq1 116 5e-21 >seq3 Length=50312079 Score = 219 bits (242), Expect = 6e-52 Identities = 578/873 (66%), Gaps = 12/873 (1%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || || || || || || || ||||| || |||||||| || || | ||| || || Sbjct 34659351 TTCTGATACTCCCCAACTCGCTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 34659292 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| ||||||| ||||| |||||||| || || | | || || || | | Sbjct 34659291 TCCATCCAATCAAATGGATTCTGCACATTATACATCTTCCCATACCCCAACGCTCCCAAC 34659232 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 | ||||| || || || | |||||| |||||| || | |||||| || | | Sbjct 34659231 AACCTATCCGCCACAAACTTAATATACTGACTCATCAAATCCCCATTCATCCCAACCAAA 34659172 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 ||| | ||| || || |||||| ||||| || ||||||| || ||| Sbjct 34659171 GCACACGGCAAAGCATCACAAACAAACTCCCTCTCAATCTCAACCGCATCCGCTACAATC 34659112 Query 46579 GATGTTACTGTTTCCTCACTTGG-TGGATGC--ATCAAATGTTTAAACATTAAACATGCA 46635 | || |||||||| || | || | | ||||| | ||||| ||||||| Sbjct 34659111 CCCTTAACCCGCTCCTCACTCGGCTTCATCCTCAACAAATCATACAACAT---ACATGCA 34659055 Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695 ||||||||||| || || ||||| || ||| | || || || || || | || ||| Sbjct 34659054 AAATCACAATGCAGACCCTCATCCCTCGAAATCAGCTCATTCGAGAAAGTCAATCCGGGC 34658995 Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATATGCC 46754 || || || | ||| || |||||||| || | ||| ||| | || || || || || || Sbjct 34658994 ATAAGCCCCCTCTTCTTCAGCCAAAAAATCG-CGCAGAAGCTCCCCGAGAAAAAAATCCC 34658936 Query 46755 TTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT--ATGAATCCAC 46812 ||| ||| || || || | || || ||||||| || | | | | || ||||||| Sbjct 34658935 TTCCACACAAGCAAACGCAATAA-TC-CTCTCCGCAAACGACTCCCCTCCATCAATCCAC 34658878 Query 46813 CTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 || ||||| | ||||| |||| ||||| || || || || || || | || | Sbjct 34658877 CTCATCGCCCACTTGGCCTTCTTCTCGACACACGGAATCGTCTCAATCGCCCTGAACAAC 34658818 Query 46873 AAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAA 46932 || || || ||| |||| ||| | || | || | ||||||||| || ||| Sbjct 34658817 CTCGCCTTCTCCTCCGAATCCTTAATATAACTCTCCAACAACAAACTATACATCTCCGAA 34658758 Query 46933 TGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACC 46992 ||||| || || || || |||||||| || |||||| || || || | | ||| ||| Sbjct 34658757 TGAATATTCTCTATCGCAATCTGAAACCCATAAAAAGCCCTCGCCTCCGCCACCTGCACC 34658698 Query 46993 TCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAAT 47052 || | ||| | | | ||||||||| ||| || |||||| ||| || ||||| Sbjct 34658697 TCCTTCATAAACCTCCCGGCCAAATTCTCGAGCACAATGCCATCAGAAGCGGCGAAAAAA 34658638 Query 47053 GCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATA 47112 || | ||||| ||||||| | || ||||| | ||||| | ||||| | || Sbjct 34658637 GCGAGAACATGGGTAATAAAGTGCTTCTCATCAGAAGTCAAAGCTTCCCAGTGAACATTA 34658578 Query 47113 TCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATA 47172 |||| |||| ||| ||||| || || |||||||| || ||||| ||||| || ||||| Sbjct 34658577 TCTTGAGATAAATCGACTTCCTCGGCGGTCCAGAAAGAGGCCTCGGCTTTCTTGTACATC 34658518 Query 47173 TTCCATATATCACGATATTGGATCGGAAAAATA 47205 | ||| || | | | ||||| || || || ||| Sbjct 34658517 TCCCAGATCTGAGGGTATTGAATTGGGAACATA 34658485 Score = 145 bits (160), Expect = 1e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| || ||||| | ||| | ||||||| ||| |||| | | |||||||| ||| || Sbjct 36375077 ACCCCCTTGATCAACATAGCGAGCAGTGTCATTGAAAACACGAAGCATTGGAACAATACC 36375018 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || |||||||||||||||||| ||||||||| ||| ||||| |||||| || ||| Sbjct 36375017 ATTGGATGTACCATTTGTTCCACGAATATAACTACCAGTAGCACGGATATTATGAAGAGA 36374958 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || ||| ||| | |||||| |||||||||||||| || Sbjct 36374957 CACACCGATTCCTCCAGCTGATTTGCTGATCACAGCACACTCCTTCAATGTGTCATATAT 36374898 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||| || ||||| |||||| |||| || || || |||||| Sbjct 36374897 GCCTTCAATACTGTCATCCTTCATACAAACCAGGAAGCAGCTA 36374855 Score = 145 bits (160), Expect = 1e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| || ||||| | ||| | ||||||| ||| |||| | | |||||||| |||||| Sbjct 36404323 ACCCCCTTGATCAACATAGCGAGCAGTGTCATTGAAAACACGAAGCATTGGAACAATGCC 36404264 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || |||||||||||||||||| ||||||||| ||| ||||| |||||| || ||| Sbjct 36404263 ATTGGATGTACCATTTGTTCCACGAATATAACTACCAGTGGCACGGATATTATGAAGAGA 36404204 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || ||| ||| | |||||| ||||| |||||||| || Sbjct 36404203 CACACCGATTCCTCCAGCTGATTTGCTGATCACAGCACACTCCTTCAAAGTGTCATATAT 36404144 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||| || ||||| |||||| |||| || || || |||||| Sbjct 36404143 GCCTTCAATACTGTCATCCTTCATACAAACCAGGAAGCAGCTA 36404101 >seq1 Length=51465339 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | || | |||||||| ||| |||| | | |||||||| ||| || Sbjct 14682339 CCTCCTTGATCAACGTAACAGGCAGTGTCATTGAAAACACGGAGCATTGGAACAATTCCA 14682280 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||||||||| || || ||||| ||| || |||||||||||| || ||| Sbjct 14682279 TTGGATGTACCATTAGTCCCTCGAATATGACTGCCTGTGGCACGAATATTATGAACAGAA 14682220 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || | ||| ||| | ||||| ||||| || ||||| ||| Sbjct 14682219 ACGCTAATTCCTCCAGCTAATTTGCTGATAATTGCACACTCCTTCAAAGTATCATATATG 14682160 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 | || ||| |||||||| |||| || || || |||||| Sbjct 14682159 CGTTCAATATTATCATCCTTCATACAAACTAGGAAGCAGCTA 14682118 Score = 114 bits (126), Expect = 2e-20 Identities = 130/172 (76%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 ||||||||||||||| | ||| | || || || | ||||||| |||| |||| || Sbjct 14682918 CTCTCTTTCATATTGGGCATACAGGTTCTCGAACTCTTGTCCCCAACAATCAGCCAAGCC 14682859 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAA 76610 ||| |||||| ||||| | ||| |||||| |||||| | | || |||| || ||||| Sbjct 14682858 TGGAGCTTCATTTGGACAGAACAAGGACCACACACCAT-TGCTTTGTACCCTTTCCATAA 14682800 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 | |||||||| ||||| || ||| ||||| |||||| | || | ||||||| Sbjct 14682799 ATAGATCAGGAATCCAAAGGGCATAAAATAAATCTCGAGCTCGATGTTCTTC 14682748 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| |||||||| | || || |||||||||||||||||| | || | | || | Sbjct 14681980 GTTCCCGCATTAAAAAGGGTTGGTGATGCATGAGTGAACCATCGCTGGGACATCAAATGG 14681921 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||| | ||| | | ||| | ||| | || |||||| ||||| || | ||||| Sbjct 14681920 TATGTCTTGATAGCAGATTCAACATCATCCTTATAAATTCCAACAGCAACTCTCATCAGA 14681861 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || || || | || ||| ||| | || ||||| | ||| ||| | |||| Sbjct 14681860 ATGTGTTGTGGCCTCTCAACAACCTTCCCCTCAATCTTCAAAAGGTAGGATCTCTCCAGG 14681801 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| || ||||| || | || |||||||| || ||||| || Sbjct 14681800 GTTTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAAATTAT 14681754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712891392232320