Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq3 170 2e-37 seq8 87.8 2e-12 >seq3 Length=50312079 Score = 170 bits (188), Expect = 2e-37 Identities = 394/588 (67%), Gaps = 7/588 (1%) Strand=Plus/Minus Query 23501 ACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAA 23560 |||| | |||||||||||||||||| || || |||||||| ||||| ||||| || | Sbjct 34659068 ACAACATACATGCAAAATCACAATGCAGACCCTCATCCCTCGAAATCAGCTCATTCGAGA 34659009 Query 23561 ATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCG- 23619 | || ||||| ||||| | || | || || | |||||| || || ||| | | ||| Sbjct 34659008 AAGTCAATCCGGGCATAAGCCCCCTCTTCTTCAGCCAAAAAATCGC-GCAGAAGCTCCCC 34658950 Query 23620 GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTAC-CAAATGTTGCATT 23678 || || ||||| || || ||| ||||| || | || | | | | |||| | | Sbjct 34658949 GAGAAAAAAATCCCTTCCACACAAGCAAACGCAATAATCC-TCTCCGCAAACGACTCCCC 34658891 Query 23679 ATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTC 23738 |||| ||||| | | | ||| || |||||| | |||||| ||| || || Sbjct 34658890 TCCATCA---ATCCACCTCATCGCCCACTTGGCCTTCTTCTCGACACACGGAATCGTCTC 34658834 Query 23739 AATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAA 23798 ||| || | || | | || || || ||| | ||||| | || | | || Sbjct 34658833 AATCGCCCTGAACAACCTCGCCTTCTCCTCCGAATCCTTAATATAACTCTCCAACAACAA 34658774 Query 23799 ACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGC 23858 ||||||||| || ||||||||||| || || ||||||||||||||||||||| || || Sbjct 34658773 ACTATACATCTCCGAATGAATATTCTCTATCGCAATCTGAAACCCATAAAAAGCCCTCGC 34658714 Query 23859 TTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATC 23918 || | || || || || || | ||| || || ||||| ||| ||||| ||||| Sbjct 34658713 CTCCGCCACCTGCACCTCCTTCATAAACCTCCCGGCCAAATTCTCGAGCACAATGCCATC 34658654 Query 23919 ACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTT 23978 | ||| || || ||||| ||||||| | ||||| || | ||||||| | || Sbjct 34658653 AGAAGCGGCGAAAAAAGCGAGAACATGGGTAATAAAGTGCTTCTCATCAGAAGTCAAAGC 34658594 Query 23979 TTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAA 24038 || ||| | | | |||||| |||||||| ||||| || | ||||| ||| ||| Sbjct 34658593 TTCCCAGTGAACATTATCTTGAGATAAATCGACTTCCTCGGCGGTCCAGAAAGAGGCCTC 34658534 Query 24039 GGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATAT 24086 ||| ||| ||||| ||| || | | | ||| ||||| || || Sbjct 34658533 GGCTTTCTTGTACATCTCCCAGATCTGAGGGTATTGAATTGGGAACAT 34658486 >seq8 Length=31745509 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 23860 TCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCA 23919 |||| | |||||||||||| ||||||||| |||||||||||| |||||| ||||| Sbjct 25723813 TCAGGAATTTGAACATCATTCAAAAATCTTGCAGCTAAATTTTCCAGAACAATTCCATCT 25723872 Query 23920 CTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTT 23979 ||||| || || || | ||| | ||||||||||| | ||| ||| || || || Sbjct 25723873 GATGCAGCGAAAAAGGCCAAAACGTGGCTTATAAAATGTTTCTCAGAAGTAGACAAAGTT 25723932 Query 23980 TTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTG 24022 | ||| | | | ||| || | ||||||||| || |||| Sbjct 25723933 TCCCAGTGTTGCACATCGAGAGAAAGATCAACTTCCTCCACTG 25723975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521456541236400