Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq7 145 7e-30 seq2 125 7e-24 seq1 125 7e-24 seq6 107 2e-18 seq3 100 3e-16 >seq7 Length=36358036 Score = 145 bits (160), Expect = 7e-30 Identities = 174/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 ||||||||||| || || | || || || || ||| ||||||||| ||||| |||||| Sbjct 14364778 CCGCCGCCGCGGAGGCGGAGAACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCG 14364719 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 | ||||| | |||| |||||||||||||||||||| || |||||||| ||||||| Sbjct 14364718 GCTAGGGTTCTGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGC 14364659 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811 || | || || |||| | ||| | || |||| || | | | |||||| || || Sbjct 14364658 GGGATGCCTTCTTTGT-CTTGAATCTTGGCTTTGACATTGTCGATTGTGTCGGAGGATTC 14364600 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||| || || ||||| || || || || || ||||| |||||||| || Sbjct 14364599 CACCTCCAGGGTGATAGTTTTGCCGGTGAGGGTTTTCACGAAGATCTGCATCTT 14364546 >seq2 Length=43913520 Score = 125 bits (138), Expect = 7e-24 Identities = 170/235 (72%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 ||||||||||| ||||| | || || || || ||| ||||||||| ||||| |||||| Sbjct 31249806 CCGCCGCCGCGGAGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCG 31249747 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 | ||||| | |||| || |||||||| |||||||| || |||||||| ||||||| Sbjct 31249746 GCTAGGGTTCTGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGA 31249687 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810 || | || || |||||| ||| || ||| || | || | ||||| |||| Sbjct 31249686 GGGATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTGTCG--ATGGTGTCCGAAGACT 31249629 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | ||||| | || || || || || || || || || ||||| |||||||| || Sbjct 31249628 CGACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATTTT 31249574 Score = 105 bits (116), Expect = 6e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || ||| ||||||||||| || || || | Sbjct 39747576 CCTCCACGAAGACGGAGCACAAGGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGCC 39747517 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | |||| ||||||||||| || || || |||| | ||| ||||||| |||| Sbjct 39747516 AGAGTCCTTCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGGGGA 39747457 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812 | || |||||| ||| ||| | || || | || | || | ||| || || ||| Sbjct 39747456 ATGCCCTCCTTATCC-TGAATCTTGGCCTTGACATTGTCA-ATTGTGTCT-GAGCTCTCG 39747400 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || ||||| || || |||| |||||| ||||| |||||||| Sbjct 39747399 ACTTCCAGAGTGATCGTCTTTCCGGTCAACGTCTTAACGAAGATCTGCAT 39747350 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || ||||| || ||| ||||||||| ||||| ||||| | Sbjct 39747348 CCCCCGCGGAGACGGAGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCC 39747289 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || ||||||||||| || ||||| || || || || || || | ||| Sbjct 39747288 AGAGTCCTGCCATCTTCGAGCTGCTTACCAGCGAAAATAAGACGTTGCTGATCAGGAGGA 39747229 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| || | || |||| ||| | | | ||||| ||||| Sbjct 39747228 ATGCCTTCCTTGTCC-TGGATCTTGGCTTTGACGTTGTCGATTGTGTCAGAACTTTCCAC 39747170 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || ||||| || || || || |||||||| Sbjct 39747169 CTCCAAGGTGATGGTCTTTCCGGTCAGAGTTTTCACAAAGATCTGCAT 39747122 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| || |||| || || ||| ||||||||| || ||||| || | Sbjct 39748717 GCCACCACGGAGACGCAAGACCAAGTGAAGGGTGGACTCCTTCTGGATATTATAATCAGC 39748658 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || | | || || || ||||| || || || |||| | ||| || || | || Sbjct 39748657 CAGAGTCCTACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGG 39748598 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC--C 41812 || | ||||||||| ||| || ||| ||| | || | || || |||| | Sbjct 39748597 AATTCCTTCCTTGTCCTGGATCTTCGCCTT-AACATTGTCAATG-GTATCTGAACTCTCC 39748540 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | ||||| || || || ||||| ||||| |||||||||||||| Sbjct 39748539 ACCTCTAGGGTTATAGTCTTGCCGGTCAGAGTCTTCACGAAAATCTGCAT 39748490 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||||| || || ||| ||||||||||| ||||| | Sbjct 39748032 CCACCACGGAGTCGGAGAACCAGATGGAGTGTTGACTCTTTCTGAATGTTGTAGTCTGCA 39747973 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || || ||||| || ||||| |||| | ||| ||||| | |||| Sbjct 39747972 AGAGTCCTGCCATCCTCCAGTTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 39747913 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812 | | ||||||||| || | || |||| || | || | || | ||| ||| Sbjct 39747912 ATTCCTTCCTTGTCC-TGGATCTTAGCTTTCACATTGTCA-ATCGTATC-CGAGCTCTCA 39747856 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || |||| ||||| || ||||||||||| Sbjct 39747855 ACCTCCAGGGTAATAGTCTTGCCTGTCAAGGTCTTGACAAAAATCTGCAT 39747806 >seq1 Length=51465339 Score = 125 bits (138), Expect = 7e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 ||||||||||| || || | || || || || ||| |||||||| ||||| |||||| Sbjct 30446224 CCGCCGCCGCGGAGGCGGAGGACGAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCG 30446283 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 | ||||| | |||| |||||||| || |||||||| || ||||| || ||||| | Sbjct 30446284 GCTAGGGTTCTGCCGTCCTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCGGGA 30446343 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811 || | || || |||| | || |||| |||| || | | | |||||| || || Sbjct 30446344 GGGATGCCTTCTTTGT-CTTGGATTTTGGCTTTGACATTGTCGATGGTGTCGGAGGATTC 30446402 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || ||||| || || || || |||||||| |||||||| Sbjct 30446403 CACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTTACGAAGATCTGCAT 30446453 >seq6 Length=36610139 Score = 107 bits (118), Expect = 2e-18 Identities = 166/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || |||||||| | ||||| ||| || || |||||||| ||||| ||||| | Sbjct 34641801 GCCACCACGTAGACGGAGCACCAAATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGC 34641742 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| || ||||||||||| || || || || | ||| ||||| | ||| Sbjct 34641741 AAGGGTGCGACCGTCTTCCAGCTGCTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGGGG 34641682 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 | || |||||||||| || | || |||| ||| | | |||||| ||| | Sbjct 34641681 GATGCCCTCCTTGTCC-TGGATCTTAGCTTTAACATTATCAATAGTGTCAGAGCT---TT 34641626 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || || | || || || || || || || ||||| || || ||||||||| Sbjct 34641625 CAACTTCTAGGGTGATGGTCTTTCCAGTAAGTGTCTTAACAAAGATCTGCATG 34641573 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | ||||| ||| || || |||||||| || || ||||| | Sbjct 34079352 CCACCACGTAGACGGAGCACCAAATGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGCA 34079293 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||||||||| || || || || | ||| ||||| | ||| Sbjct 34079292 AGGGTGCGACCGTCTTCCAGCTGCTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGGGGG 34079233 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || |||||||||| || | || |||| || | | |||||| ||| || Sbjct 34079232 ATGCCCTCCTTGTCC-TGGATCTTAGCTTTGACATTATCAATAGTGTCAGAGCT---TTC 34079177 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || | || || || || || || || ||||| || || ||||||||| Sbjct 34079176 AACTTCTAGGGTGATTGTCTTGCCAGTAAGTGTCTTAACAAATATCTGCATG 34079125 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || || ||| || ||||| || ||||| | Sbjct 34079808 CCCCCACGGAGACGGAGCACAAGATGGAGGGTAGACTCTTTTTGAATATTGTAGTCTGCA 34079749 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || || || || || || ||||| || | ||| ||||| | || Sbjct 34079748 AGTGTGCGGCCATCTTCAAGTTGTTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGG 34079689 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCAC 41814 | || ||| ||||| ||| | ||||||| || || ||||||| |||||| Sbjct 34079688 ATGCCCTCTTTGTCT-TGAATCTTTGCTTTGACATTATCAATAGTGTCGGAGCTCTCCAC 34079630 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| || || || || |||| ||||| || ||||||||||| Sbjct 34079629 CTCTAGCGTGATGGTCTTTCCTGTCAAAGTCTTCACAAAAATCTGCAT 34079582 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| ||| || || ||||||||| ||||||||||| | Sbjct 34407214 CCACCACGCAGGCGGAGCACCAAATGAAGGGTTGACTCCTTCTGGATGTTATAGTCAGCA 34407155 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || |||||||| || || || || || | ||| ||||||| || Sbjct 34407154 AGAGTACGGCCGTCTTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGTGGG 34407095 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | |||||| ||| ||| | || |||| || | | |||||| ||| || Sbjct 34407094 ATACCCTCCTTATCC-TGAATCTTAGCTTTGACATTATCAATAGTGTCAGAGCT---TTC 34407039 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || | || || || || || || || ||||| || |||||||||||| Sbjct 34407038 AACTTCTAAGGTAATAGTCTTTCCAGTAAGGGTCTTAACAAAAATCTGCATG 34406987 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/223 (70%), Gaps = 10/223 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || || || || |||||||| || ||||| | ||||| || Sbjct 34407661 AGACGGAGCACCAAGTGGAGGGTAGATTCTTTCTGAATATTGTAGTCAGCAAGGGTACGA 34407602 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || || || ||||| | ||| ||||| | || | || || Sbjct 34407601 CCATCCTCAAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCT 34407542 Query 41765 TTGTCCATGATTTTTTGC-TTCA-ACGACGACACAGTGTC---GCTCGACTCCACCTCCA 41819 || ||| ||| ||||||| |||| | | | | ||||| |||| |||||||||| Sbjct 34407541 TTATCC-TGAATTTTTGCCTTCACATTATCA-ATTGTGTCTGAGCTC---TCCACCTCCA 34407487 Query 41820 CCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || |||| ||||| || ||||||||||| Sbjct 34407486 AAGTAATTGTCTTTCCTGTCAATGTCTTCACAAAAATCTGCAT 34407444 >seq3 Length=50312079 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | ||||| ||| || || |||||||| ||||||||||| | Sbjct 6143723 GCCACCGCGAAGGCGGAGCACCAAATGGAGGGTTGATTCCTTCTGGATGTTATAGTCAGC 6143664 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| ||| | || |||||||||||||| || || || || | ||| ||||| | || Sbjct 6143663 AAGGGTACGCCCATCTTCGAGCTGCTTGCCAGCAAAAATGAGCCTCTGCTGGTCTGGTGG 6143604 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||||||| || | || |||| || | | ||| || || | Sbjct 6143603 GATACCCTCCTTGTCC-TGGATCTTAGCTTTGACATTATCAATAGTATCAGAACTTTCAA 6143545 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | || || || || || || || |||||||||||||||||||| Sbjct 6143544 CTTCTAGAGTGATAGTCTTTCCGGTAAGGGTCTTTACGAAAATCTGCAT 6143496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462276111511200