Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq16048 95.1 1e-14
seq15946 95.1 1e-14
seq11586 95.1 1e-14
>seq16048
Length=246288
Score = 95.1 bits (104), Expect = 1e-14
Identities = 124/169 (73%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020
||||| || || ||||| || | |||||||| | || ||||| || || || ||
Sbjct 204516 AGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTT 204457
Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080
||||| ||||| ||| || || || | |||||| |||||| ||| ||||||||||
Sbjct 204456 AACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAG 204397
Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGT-TCGGCGTACGTC 17128
||||| |||||||| | ||||| |||| ||||| | || || |||||
Sbjct 204396 AATATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACGTC 204349
>seq15946
Length=172941
Score = 95.1 bits (104), Expect = 1e-14
Identities = 124/169 (73%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020
||||| || || ||||| || | |||||||| | || ||||| || || || ||
Sbjct 58581 AGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTT 58522
Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080
||||| ||||| ||| || || || | |||||| |||||| ||| ||||||||||
Sbjct 58521 AACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAG 58462
Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGT-TCGGCGTACGTC 17128
||||| |||||||| | ||||| |||| ||||| | || || |||||
Sbjct 58461 AATATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACGTC 58414
>seq11586
Length=26096
Score = 95.1 bits (104), Expect = 1e-14
Identities = 124/169 (73%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020
||||| || || ||||| || | |||||||| | || ||||| || || || ||
Sbjct 4339 AGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTT 4280
Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080
||||| ||||| ||| || || || | |||||| |||||| ||| ||||||||||
Sbjct 4279 AACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAG 4220
Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGT-TCGGCGTACGTC 17128
||||| |||||||| | ||||| |||| ||||| | || || |||||
Sbjct 4219 AATATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACGTC 4172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517253911299840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |