Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq16048 95.1 1e-14 seq15946 95.1 1e-14 seq11586 95.1 1e-14 >seq16048 Length=246288 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 ||||| || || ||||| || | |||||||| | || ||||| || || || || Sbjct 204516 AGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTT 204457 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 ||||| ||||| ||| || || || | |||||| |||||| ||| |||||||||| Sbjct 204456 AACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAG 204397 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGT-TCGGCGTACGTC 17128 ||||| |||||||| | ||||| |||| ||||| | || || ||||| Sbjct 204396 AATATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACGTC 204349 >seq15946 Length=172941 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 ||||| || || ||||| || | |||||||| | || ||||| || || || || Sbjct 58581 AGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTT 58522 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 ||||| ||||| ||| || || || | |||||| |||||| ||| |||||||||| Sbjct 58521 AACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAG 58462 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGT-TCGGCGTACGTC 17128 ||||| |||||||| | ||||| |||| ||||| | || || ||||| Sbjct 58461 AATATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACGTC 58414 >seq11586 Length=26096 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 ||||| || || ||||| || | |||||||| | || ||||| || || || || Sbjct 4339 AGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTT 4280 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 ||||| ||||| ||| || || || | |||||| |||||| ||| |||||||||| Sbjct 4279 AACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAG 4220 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGT-TCGGCGTACGTC 17128 ||||| |||||||| | ||||| |||| ||||| | || || ||||| Sbjct 4219 AATATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACGTC 4172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517253911299840