Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq16048 93.3 4e-14 seq15946 93.3 4e-14 seq11586 93.3 4e-14 >seq16048 Length=246288 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/155 (75%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||| || |||||||| || || || ||||| | || ||||| || || || ||| Sbjct 204516 AGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTT 204457 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 ||||| ||||| ||| || || || | ||| || ||||| ||| || ||| ||||| Sbjct 204456 AACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAA 204398 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATC 16352 |||||| ||||| ||| | |||||||||| ||||| Sbjct 204397 GAATATCCCCTCGACACACGCAAAAGCGA-TAATC 204364 >seq15946 Length=172941 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/155 (75%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||| || |||||||| || || || ||||| | || ||||| || || || ||| Sbjct 58581 AGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTT 58522 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 ||||| ||||| ||| || || || | ||| || ||||| ||| || ||| ||||| Sbjct 58521 AACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAA 58463 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATC 16352 |||||| ||||| ||| | |||||||||| ||||| Sbjct 58462 GAATATCCCCTCGACACACGCAAAAGCGA-TAATC 58429 >seq11586 Length=26096 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/155 (75%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||| || |||||||| || || || ||||| | || ||||| || || || ||| Sbjct 4339 AGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTT 4280 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 ||||| ||||| ||| || || || | ||| || ||||| ||| || ||| ||||| Sbjct 4279 AACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAA 4221 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATC 16352 |||||| ||||| ||| | |||||||||| ||||| Sbjct 4220 GAATATCCCCTCGACACACGCAAAAGCGA-TAATC 4187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511126166844160