Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq16048 93.3 4e-14
seq15946 93.3 4e-14
seq11586 93.3 4e-14
>seq16048
Length=246288
Score = 93.3 bits (102), Expect = 4e-14
Identities = 116/155 (75%), Gaps = 3/155 (2%)
Strand=Plus/Minus
Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258
||||| || |||||||| || || || ||||| | || ||||| || || || |||
Sbjct 204516 AGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTT 204457
Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317
||||| ||||| ||| || || || | ||| || ||||| ||| || ||| |||||
Sbjct 204456 AACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAA 204398
Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATC 16352
|||||| ||||| ||| | |||||||||| |||||
Sbjct 204397 GAATATCCCCTCGACACACGCAAAAGCGA-TAATC 204364
>seq15946
Length=172941
Score = 93.3 bits (102), Expect = 4e-14
Identities = 116/155 (75%), Gaps = 3/155 (2%)
Strand=Plus/Minus
Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258
||||| || |||||||| || || || ||||| | || ||||| || || || |||
Sbjct 58581 AGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTT 58522
Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317
||||| ||||| ||| || || || | ||| || ||||| ||| || ||| |||||
Sbjct 58521 AACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAA 58463
Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATC 16352
|||||| ||||| ||| | |||||||||| |||||
Sbjct 58462 GAATATCCCCTCGACACACGCAAAAGCGA-TAATC 58429
>seq11586
Length=26096
Score = 93.3 bits (102), Expect = 4e-14
Identities = 116/155 (75%), Gaps = 3/155 (2%)
Strand=Plus/Minus
Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258
||||| || |||||||| || || || ||||| | || ||||| || || || |||
Sbjct 4339 AGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTT 4280
Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317
||||| ||||| ||| || || || | ||| || ||||| ||| || ||| |||||
Sbjct 4279 AACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAA 4221
Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATC 16352
|||||| ||||| ||| | |||||||||| |||||
Sbjct 4220 GAATATCCCCTCGACACACGCAAAAGCGA-TAATC 4187
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511126166844160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |