Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq16048 136 5e-27 seq15946 134 2e-26 seq11586 134 2e-26 seq16271 95.1 1e-14 seq16162 89.7 6e-13 >seq16048 Length=246288 Score = 136 bits (150), Expect = 5e-27 Identities = 391/588 (66%), Gaps = 19/588 (3%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| || || |||||||| ||||||||||| | | ||| | ||| || || || || | Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 24252 || ||||| || |||||||||||||||||||| || | |||| || |||||||||| Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 204396 Query 24253 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG--TCATG 24310 | || || || || |||||| || |||| || |||| || || | | | ||| Sbjct 204395 ATATCCCCTCGACACACGCAAAAGCGATAA-TC-CTCTCAGCAAACGTCTCAGAACCATC 204338 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| |||||||| |||||||| || || ||| || ||||| | |||| Sbjct 204337 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 204278 Query 24371 AAAGAGATAGtttttttC-ATTAC-TATCTTTAACATATGTATCAATCAAAAGACTATAC 24428 ||| | || | ||| | || ||| | || ||| || |||| |||||| ||| Sbjct 204277 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 204220 Query 24429 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTA 24488 || ||||||||||| || ||||| || || ||||| ||||| || | || |||| Sbjct 204219 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGG 204160 Query 24489 ATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 24548 | ||| | || | || || || | || || || || || ||| || Sbjct 204159 AGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCG 204100 Query 24549 GCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGT---GTTAGTTTA 24602 ||||| || || | || || | || |||| || ||||| ||| | | ||| | Sbjct 204099 GCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATCGTC-GGTCAAGGTCGTTGA 204041 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 ||| | | | |||| || | ||| |||||||| | |||||||| ||||| || Sbjct 204040 --CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCG 203983 Query 24663 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 || || || ||||| | |||||| | | || |||||||| || ||| Sbjct 203982 GCTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 203935 >seq15946 Length=172941 Score = 134 bits (148), Expect = 2e-26 Identities = 242/344 (70%), Gaps = 10/344 (3%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| || || |||||||| ||||||||||| | | ||| | ||| || || || || | Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 24252 || ||||| || |||||||||||||||||||| || | |||| || |||||||||| Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 58461 Query 24253 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG--TCATG 24310 | || || || || |||||| || |||| || |||| || || | | | ||| Sbjct 58460 ATATCCCCTCGACACACGCAAAAGCGATAA-TC-CTCTCAGCAAACGTCTCAGAACCATC 58403 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| |||||||| |||||||| || || ||| || ||||| | |||| Sbjct 58402 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 58343 Query 24371 AAAGAGATAGtttttttC-ATTAC-TATCTTTAACATATGTATCAATCAAAAGACTATAC 24428 ||| | || | ||| | || ||| | || ||| || |||| |||||| ||| Sbjct 58342 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 58285 Query 24429 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 24472 || ||||||||||| || ||||| || || ||||| ||||| || Sbjct 58284 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAA 58241 >seq11586 Length=26096 Score = 134 bits (148), Expect = 2e-26 Identities = 242/344 (70%), Gaps = 10/344 (3%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| || || |||||||| ||||||||||| | | ||| | ||| || || || || | Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 24252 || ||||| || |||||||||||||||||||| || | |||| || |||||||||| Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 4219 Query 24253 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG--TCATG 24310 | || || || || |||||| || |||| || |||| || || | | | ||| Sbjct 4218 ATATCCCCTCGACACACGCAAAAGCGATAA-TC-CTCTCAGCAAACGTCTCAGAACCATC 4161 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| |||||||| |||||||| || || ||| || ||||| | |||| Sbjct 4160 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 4101 Query 24371 AAAGAGATAGtttttttC-ATTAC-TATCTTTAACATATGTATCAATCAAAAGACTATAC 24428 ||| | || | ||| | || ||| | || ||| || |||| |||||| ||| Sbjct 4100 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 4043 Query 24429 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 24472 || ||||||||||| || ||||| || || ||||| ||||| || Sbjct 4042 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAA 3999 >seq16271 Length=354655 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | |||| |||||||| ||| | || | || ||| ||| |||| || Sbjct 278735 TCCTCCTTGATCAACATATCGAGCGGTGTCATTGAACACCCGCAGCATCGGAGTAATGCC 278794 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| ||||| ||||| || || || || || || ||||||||||||| ||| || Sbjct 278795 ATTTGATGCTCCATTTGTGCCACGAATGTAACTGCCTGTGGCACGAATATTGTGAATAGA 278854 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || |||| || | || ||| || || ||||| || || Sbjct 278855 GACACCAATACCTCCAGCAGATTTACTTATAACAGCACATTCCTTCAATGTATCGTAAAT 278914 Query 54364 GCCCTCTATACTATCATCCATCATG 54388 |||||| || || || || ||||| Sbjct 278915 GCCCTCGATGCTGTCCTCTTTCATG 278939 >seq16162 Length=245457 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || | ||| || ||||| || || ||||| | | ||| | | || | Sbjct 40932 GTGCCAGCATTGAAGAGGGTCGGGGAAGCATGAGTGAACCACCTCTGAGACATGAAATGG 40873 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || || | ||| || || || ||||| | ||| || || ||||| || | ||| ||| Sbjct 40872 TATGTTTTGATTGCAGACTCAATATCGTCCTTATGGATACCGACTGCAACTCTCATCAAC 40813 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 || |||||||| || || || | ||| | | |||| || || ||| | || | Sbjct 40812 ATATGCTGAGGCCTCTCCACAACCTTTCCACTAACCTTCAACAGATACGATCTCTCGAGG 40753 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||| ||||||||||| | || |||||| || |||||||| || Sbjct 40752 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGGTCGTAAATGAT 40706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593386978506240