Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq15394 102 7e-17
seq13404 89.7 4e-13
seq14479 84.2 2e-11
>seq15394
Length=94532
Score = 102 bits (112), Expect = 7e-17
Identities = 91/114 (80%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135
||||||||||| || ||||| || || ||||| || |||||| | ||| ||||| ||
Sbjct 44282 GATCAACAAAGGCTAATCTTCGCTGGAAAACAGCTCGAAGATGGCCGAACAATGGCGGAC 44341
Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189
||||| || ||||||||||| || |||||| |||| |||||| | || ||||||
Sbjct 44342 TACAACATCCAGAAGGAATCGACGCTTCACTTGGTTTTACGACTCCGTGGAGGG 44395
>seq13404
Length=35904
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| ||| | || || ||||| ||||| ||||| ||| ||| || |
Sbjct 5890 ATGCAAATCTTCGTAAAGACTTTGACCGGCAAGACCATCACCCTCGAGGTTGAGAGTTCC 5949
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| ||| | | | || | ||| ||||| ||||| ||||| | || ||| ||
Sbjct 5950 GACACGATTGACAATGTCAAGACCAAAATCCAGGATAAGGAAGGCATCCCACCAGACCAG 6009
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
||||| || ||||||||||| |||||||| || ||| || |||| || || |||
Sbjct 6010 CAAAGGCTGATCTTTGCGGGTAAACAACTCGAGGATGGGCGCACGTTGGCAGACTATAAT 6069
Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165
|||||||||||||| || || |||
Sbjct 6070 ATTCAGAAGGAATCGACCCTCCAC 6093
>seq14479
Length=56811
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || ||| |||| || ||||| ||||| ||||| || ||| || | |
Sbjct 51140 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 51081
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | | | | || ||||| ||||| || ||| | ||| ||| ||
Sbjct 51080 GACACTATTGACAACGTCAAAACCAAAATCCAGGATAAGGAGGGTATTCCCCCAGACCAG 51021
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
||||| |||||||||||||| || || || || ||| ||| ||||||| |||||
Sbjct 51020 CAAAGGCTTATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACTTTGGCCGACTACAAC 50961
Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165
|| |||||||| ||||| ||||||
Sbjct 50960 ATCCAGAAGGAGTCTACCCTTCAC 50937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428100625084640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |