Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq15394 102 7e-17 seq13404 89.7 4e-13 seq14479 84.2 2e-11 >seq15394 Length=94532 Score = 102 bits (112), Expect = 7e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||||||||| || ||||| || || ||||| || |||||| | ||| ||||| || Sbjct 44282 GATCAACAAAGGCTAATCTTCGCTGGAAAACAGCTCGAAGATGGCCGAACAATGGCGGAC 44341 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||||| || ||||||||||| || |||||| |||| |||||| | || |||||| Sbjct 44342 TACAACATCCAGAAGGAATCGACGCTTCACTTGGTTTTACGACTCCGTGGAGGG 44395 >seq13404 Length=35904 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || ||||| ||||| ||||| ||| ||| || | Sbjct 5890 ATGCAAATCTTCGTAAAGACTTTGACCGGCAAGACCATCACCCTCGAGGTTGAGAGTTCC 5949 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | || | ||| ||||| ||||| ||||| | || ||| || Sbjct 5950 GACACGATTGACAATGTCAAGACCAAAATCCAGGATAAGGAAGGCATCCCACCAGACCAG 6009 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| || ||||||||||| |||||||| || ||| || |||| || || ||| Sbjct 6010 CAAAGGCTGATCTTTGCGGGTAAACAACTCGAGGATGGGCGCACGTTGGCAGACTATAAT 6069 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 |||||||||||||| || || ||| Sbjct 6070 ATTCAGAAGGAATCGACCCTCCAC 6093 >seq14479 Length=56811 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || ||||| ||||| ||||| || ||| || | | Sbjct 51140 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 51081 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | || ||||| ||||| || ||| | ||| ||| || Sbjct 51080 GACACTATTGACAACGTCAAAACCAAAATCCAGGATAAGGAGGGTATTCCCCCAGACCAG 51021 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| |||||||||||||| || || || || ||| ||| ||||||| ||||| Sbjct 51020 CAAAGGCTTATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACTTTGGCCGACTACAAC 50961 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 || |||||||| ||||| |||||| Sbjct 50960 ATCCAGAAGGAGTCTACCCTTCAC 50937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428100625084640