Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq15394 93.3 3e-14 seq16084 84.2 2e-11 seq13404 84.2 2e-11 >seq15394 Length=94532 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||||||||| || ||||| || || ||||| | |||||| | ||| ||||| || Sbjct 44282 GATCAACAAAGGCTAATCTTCGCTGGAAAACAGCTCGAAGATGGCCGAACAATGGCGGAC 44341 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 ||||| || || |||||||| || |||||| |||| |||||| | || |||||| Sbjct 44342 TACAACATCCAGAAGGAATCGACGCTTCACTTGGTTTTACGACTCCGTGGAGGG 44395 >seq16084 Length=201933 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || |||| || |||||||| || || || ||| || || | | Sbjct 158 ATGCAAATCTTTGTCAAGACTTTGACGGGAAAGACGATCACCCTAGAGGTAGAGAACTCT 217 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | | ||| || || ||||| || || | || ||| ||| Sbjct 218 GACACGATCGACAACGTAAAGTCTAAGATCCAGGATAAGGAGGGGATTCCACCAGACCAA 277 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGGCCGATTACA 25212 ||| | || || |||||||| ||||| | |||||| | || |||| ||||| |||| Sbjct 278 CAACGGCTAATTTTTGCGGGAAAACAGCTCGAAGATGGACGAACACTA--GCCGACTACA 335 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 | |||||||||||||| || |||||| ||||||| || Sbjct 336 ACATTCAAAAGGAATCAACGCTTCACTTGGTGTTGCG 372 >seq13404 Length=35904 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | || || ||||| ||||| ||||| ||| ||| || | Sbjct 5890 ATGCAAATCTTCGTAAAGACTTTGACCGGCAAGACCATCACCCTCGAGGTTGAGAGTTCC 5949 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | || ||||| ||||| ||||| ||||| | || ||| || Sbjct 5950 GACACGATTGACAATGTCAAGACCAAAATCCAGGATAAGGAAGGCATCCCACCAGACCAG 6009 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| || ||||||||||| |||||| | || ||| || |||| || || ||| Sbjct 6010 CAAAGGCTGATCTTTGCGGGTAAACAACTCGAGGATGGGCGCACGTTGGCAGACTATAAT 6069 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 ||||| |||||||| || || ||| Sbjct 6070 ATTCAGAAGGAATCGACCCTCCAC 6093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410571063050432