Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq15394 93.3 3e-14
seq16084 84.2 2e-11
seq13404 84.2 2e-11
>seq15394
Length=94532
Score = 93.3 bits (102), Expect = 3e-14
Identities = 89/114 (78%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208
||||||||||| || ||||| || || ||||| | |||||| | ||| ||||| ||
Sbjct 44282 GATCAACAAAGGCTAATCTTCGCTGGAAAACAGCTCGAAGATGGCCGAACAATGGCGGAC 44341
Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262
||||| || || |||||||| || |||||| |||| |||||| | || ||||||
Sbjct 44342 TACAACATCCAGAAGGAATCGACGCTTCACTTGGTTTTACGACTCCGTGGAGGG 44395
>seq16084
Length=201933
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/217 (69%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| || |||| || |||||||| || || || ||| || || | |
Sbjct 158 ATGCAAATCTTTGTCAAGACTTTGACGGGAAAGACGATCACCCTAGAGGTAGAGAACTCT 217
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| ||| | | | | | ||| || || ||||| || || | || ||| |||
Sbjct 218 GACACGATCGACAACGTAAAGTCTAAGATCCAGGATAAGGAGGGGATTCCACCAGACCAA 277
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGGCCGATTACA 25212
||| | || || |||||||| ||||| | |||||| | || |||| ||||| ||||
Sbjct 278 CAACGGCTAATTTTTGCGGGAAAACAGCTCGAAGATGGACGAACACTA--GCCGACTACA 335
Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249
| |||||||||||||| || |||||| ||||||| ||
Sbjct 336 ACATTCAAAAGGAATCAACGCTTCACTTGGTGTTGCG 372
>seq13404
Length=35904
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| ||| | || || ||||| ||||| ||||| ||| ||| || |
Sbjct 5890 ATGCAAATCTTCGTAAAGACTTTGACCGGCAAGACCATCACCCTCGAGGTTGAGAGTTCC 5949
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| ||| | | | || ||||| ||||| ||||| ||||| | || ||| ||
Sbjct 5950 GACACGATTGACAATGTCAAGACCAAAATCCAGGATAAGGAAGGCATCCCACCAGACCAG 6009
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||||| || ||||||||||| |||||| | || ||| || |||| || || |||
Sbjct 6010 CAAAGGCTGATCTTTGCGGGTAAACAACTCGAGGATGGGCGCACGTTGGCAGACTATAAT 6069
Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238
||||| |||||||| || || |||
Sbjct 6070 ATTCAGAAGGAATCGACCCTCCAC 6093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410571063050432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |