Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq15394 118 2e-21 seq13853 116 6e-21 seq37662 113 7e-20 seq15600 107 3e-18 seq15654 104 4e-17 seq14668 104 4e-17 seq13404 104 4e-17 seq15816 98.7 1e-15 seq4575 98.7 1e-15 seq44944 86.0 9e-12 seq14479 86.0 9e-12 seq44327 84.2 3e-11 seq16149 84.2 3e-11 >seq15394 Length=94532 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || ||||| || ||||| ||||| |||| | ||| || Sbjct 44168 ATGCAGATCTTCGTGAAAACCCTAACTGGGAAAACAATAACCCTAGAAGTCGAATCATCG 44227 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| ||||| ||| ||| |||||||| || || || || ||| | |||||| Sbjct 44228 GACACAATCGACAATTTGAAATCGAAGATTCAAGAGAAGGAGGGGATTCCAGCGGATCAA 44287 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| || || || |||||||| | || ||| | |||||| | | || || || Sbjct 44288 CAAAGGCTAATCTTCGCTGGAAAACAGCTCGAAGATGGCCGAACAATGGCGGACTACAAC 44347 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 || || || ||||| || | || ||||||||||| Sbjct 44348 ATCCAGAAGGAATCGACGCTTCACTTGGTTTTACG 44382 >seq13853 Length=43806 Score = 116 bits (128), Expect = 6e-21 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | ||||| | || || || || || ||| | ||| | || ||| Sbjct 18878 ATGCAGATTTTCGTCAAGACTTTGACTGGTAAGACGATTACTCTCGAGGTAGAGAGCTCG 18937 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || |||||| || |||| || || ||||| ||||| || ||||| || || || | Sbjct 18938 -GACACAATTGACAACGTTAAGACT-AAGATTCAGGATAAGGAGGGTATTCCTCCGGACC 18995 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | |||||| | |||||||| || || ||| | ||||| | || ||||| | |||||| | Sbjct 18996 AGCAAAGGTTGATTTTTGCTGGGAAGCAACTCGAGGACGGCCGCACATTGGCAGATTACA 19055 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||| || || |||||||| ||||| || ||| | || ||||| || Sbjct 19056 ATATTCAAAAGGAGTCTACTTTGCACTTGGTGTTGCGTCTCCGTGGTGGGAT 19107 >seq37662 Length=1545 Score = 113 bits (124), Expect = 7e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | || || ||||| ||||| || || ||| | || | || ||| Sbjct 482 ATGCAAATCTTTGTCAAAACCCTAACTGGCAAGACCATGACTCTCGATGTCGAGAGCTCC 423 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| | || ||| || ||||| || ||||| || || | ||||| Sbjct 422 -GACACAATCGACAATGTCAAGACGAAGATCCAAGAGAAGGAAGGGATCCCCACAGATCA 364 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || |||||||||||||| | |||||| |||| ||||| | || ||||| Sbjct 363 GCAACGTCTAATCTTTGCAGGAAAACAGCTCGAGGATGGTCGTACATTGGCTGACTATAA 304 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||| || || || || | |||||||| || ||| | || |||||||| Sbjct 303 CGTTCAGAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTTCGTGGTGGTAT 253 >seq15600 Length=115454 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | || || ||||| ||||| || || ||| | || | || ||| Sbjct 103051 ATGCAAATCTTTGTCAAAACCCTAACTGGCAAGACCATGACTCTCGATGTCGAGAGCTCC 103110 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| | || ||| || ||||| || ||||| || || | ||||| Sbjct 103111 -GACACAATCGACAATGTCAAGACGAAGATCCAAGAGAAGGAAGGGATCCCCACAGATCA 103169 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || |||||||||||||| | |||||| |||| ||||| | || || || Sbjct 103170 GCAACGTCTAATCTTTGCAGGAAAACAGCTCGAGGATGGTCGTACATTGGCTGACTACAA 103229 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||| || || || || | |||||||| || ||| | || |||||||| Sbjct 103230 CGTTCAGAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTTCGTGGTGGTAT 103280 >seq15654 Length=163759 Score = 104 bits (114), Expect = 4e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || ||||||| | || || || || || || | ||| | || |||| Sbjct 112015 ATGCAGATTTTCGTAAAGACTTTGACGGGAAAGACCATCACCCTCGAGGTCGAGAGCAGC 112074 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || |||| |||| || ||||||||||| || || || ||||| || || Sbjct 112075 -GATACCATCGATAATGTAAAGACTAAGATTCAAGATAAGGAGGGCATCCCACCGGACCA 112133 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || ||||| | |||||| |||| || || | || || || Sbjct 112134 GCAGAGGCTGATCTTTGCTGGGAAACAGCTCGAGGATGGTCGTACTTTGGCTGACTACAA 112193 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || | || ||||| | ||| | || |||||||| Sbjct 112194 CATTCAGAAGGAATCCACCCTTCACTTGGTCCTCCGTCTTCGTGGTGGTAT 112244 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | ||||| | || || || || || || | ||| |||| |||| Sbjct 112471 ATGCAGATTTTCGTGAAGACCTTGACTGGGAAGACCATCACACTCGAGGTTGAGAGCAGC 112530 Query 124598 TGATACAATTTCTAATTTAAA-ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| || ||| | || ||| || || ||||| || || || ||||| || |||| Sbjct 112531 -GATACGATCGACAATGTCAAGACA-AAGATACAAGACAAGGAGGGAATACCGCCAGATC 112588 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| || |||||||| |||||| | ||||| | || || || | ||| |||| Sbjct 112589 AGCAGAGGCTGATCTTTGCAGGTAAACAACTCGAGGACGGGCGTACGTTGGCAGACTATA 112648 Query 124717 ATATTCAAAAAGAATCAAC 124735 ||||||| || ||||| || Sbjct 112649 ATATTCAGAAGGAATCGAC 112667 >seq14668 Length=62046 Score = 104 bits (114), Expect = 4e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || ||||||| | || ||||| || || || | ||| |||| Sbjct 42101 ATGCAAATCTTCGTAAAGACTTTGACCGGCAAGACCATCACCCTCGAGGTTGAGAGTTCC 42160 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | || ||||| || ||||| ||||| || ||||| || || Sbjct 42161 GACACAATTGACAATGTCAAGACCAAAATCCAGGATAAGGAAGGCATCCCACCAGACCAG 42220 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| || ||||| || |||||| | ||||| | || || || | ||| |||||| Sbjct 42221 CAAAGGCTGATCTTTGCTGGTAAACAACTCGAGGACGGGCGCACGTTGGCAGACTATAAT 42280 Query 124719 ATTCAAAAAGAATCAAC 124735 ||||| || ||||| || Sbjct 42281 ATTCAGAAGGAATCGAC 42297 >seq13404 Length=35904 Score = 104 bits (114), Expect = 4e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || ||||||| | || ||||| || || || | ||| |||| Sbjct 5890 ATGCAAATCTTCGTAAAGACTTTGACCGGCAAGACCATCACCCTCGAGGTTGAGAGTTCC 5949 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| || ||||| ||||| || ||||| || || Sbjct 5950 GACACGATTGACAATGTCAAGACCAAAATCCAGGATAAGGAAGGCATCCCACCAGACCAG 6009 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| || ||||| || |||||| | |||||| | || || || | ||| |||||| Sbjct 6010 CAAAGGCTGATCTTTGCGGGTAAACAACTCGAGGATGGGCGCACGTTGGCAGACTATAAT 6069 Query 124719 ATTCAAAAAGAATCAAC 124735 ||||| || ||||| || Sbjct 6070 ATTCAGAAGGAATCGAC 6086 >seq15816 Length=132008 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || ||||||| | || ||||| || || || | ||| |||| Sbjct 112795 ATGCAAATCTTCGTAAAGACTTTGACCGGCAAGACCATCACCCTCGAGGTTGAGAGTTCC 112736 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| || ||||| ||||| || ||||| || || Sbjct 112735 GACACTATTGACAATGTCAAGACCAAAATCCAGGATAAGGAAGGCATCCCACCAGACCAG 112676 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| || ||||| || |||||| | ||||| | || || || | ||| |||||| Sbjct 112675 CAAAGGCTGATCTTTGCGGGTAAACAACTCGAGGACGGGCGCACGTTGGCAGACTATAAT 112616 Query 124719 ATTCAAAAAGAATCAAC 124735 ||||| || ||||| || Sbjct 112615 ATTCAGAAGGAATCGAC 112599 >seq4575 Length=13488 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || ||||||| | || ||||| || || || | ||| |||| Sbjct 161 ATGCAAATCTTCGTAAAGACTTTGACCGGCAAGACCATCACCCTCGAGGTTGAGAGTTCC 220 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| || ||||| ||||| || ||||| || || Sbjct 221 GACACGATTGACAATGTCAAGACCAAAATCCAGGATAAGGAAGGCATCCCACCAGACCAG 280 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| || ||||| || |||||| | ||||| | || || || | ||| |||||| Sbjct 281 CAAAGGCTGATCTTTGCTGGTAAACAACTCGAGGACGGGCGCACGTTGGCAGACTATAAT 340 Query 124719 ATTCAAAAAGAATCAAC 124735 ||||| || ||||| || Sbjct 341 ATTCAGAAGGAATCGAC 357 >seq44944 Length=25146 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | ||||| | || ||||| || || ||| | ||| |||| ||| Sbjct 21008 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAGGTTGAGAGCTC- 20950 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | ||| || || || ||||| || ||||| || || || || Sbjct 20949 TGACACTATTGACAACGTCAAAACCAAGATCCAGGATAAGGAGGGTATTCCCCCAGACCA 20890 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| ||||| ||||| || | |||||| |||| || || | || || || Sbjct 20889 GCAAAGGCTTATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACTTTGGCTGACTACAA 20830 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | || | || | ||| | || |||||||| Sbjct 20829 CATCCAGAAGGAGTCTACCCTTCACCTTGTCCTCCGTCTGCGTGGTGGTAT 20779 >seq14479 Length=56811 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | ||||| | || ||||| || || ||| | ||| | || ||| Sbjct 51140 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAGGTCGAGAGCTC- 51082 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | ||| ||||| || ||||| || ||||| || || || || Sbjct 51081 TGACACTATTGACAACGTCAAAACCAAAATCCAGGATAAGGAGGGTATTCCCCCAGACCA 51022 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| ||||| ||||| || | |||||| |||| || || | || || || Sbjct 51021 GCAAAGGCTTATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACTTTGGCCGACTACAA 50962 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | || | || | ||| | || |||||||| Sbjct 50961 CATCCAGAAGGAGTCTACCCTTCACCTTGTCCTCCGTCTGCGTGGTGGTAT 50911 >seq44327 Length=9034 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | ||||| | || || || || || || | ||| |||| |||| Sbjct 7827 ATGCAGATTTTCGTGAAGACCTTGACTGGGAAGACCATCACACTCGAGGTTGAGAGCAGC 7886 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | || ||| || ||||| || || || || || || ||||| Sbjct 7887 -GATACCATCGACAATGTCAAGATGAAGATACAAGACAAGGAGGGAATCCCGCCAGATCA 7945 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || |||||| | ||||| | || || || | ||| ||||| Sbjct 7946 GCAGAGGCTGATCTTTGCGGGTAAACAACTCGAGGACGGGCGCACGTTGGCAGACTATAA 8005 Query 124718 TATTCAAAAAGAATCAAC 124735 |||||| || ||||| || Sbjct 8006 TATTCAGAAGGAATCGAC 8023 >seq16149 Length=224952 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| ||||| | || || ||||| || || || ||||| | ||| ||||| | Sbjct 103463 ATGCAGATATTCGTGAAAACCCTAACGGGGAAGACGATAACATTGGAGGTTGAATCCTCC 103522 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || ||||||||||| || ||||| || || || || ||| Sbjct 103523 GACACCATCGACAATGTGAAGACCAAAATTCAAGACAAGGAAGGCATCCCTCCCGACCAA 103582 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || || || |||||||| | || || | || ||| | | || || || Sbjct 103583 CAACGTCTCATCTTCGCCGGAAAACAGCTTGAAGACGGCCGTACACTCGCCGACTACAAC 103642 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || || || |||||||| | || | || | ||| |||| |||||| ||| || Sbjct 103643 ATCCAGAAGGAATCAACCCTCCACCTTGTCCTCCGTCTACGCGGTGGTGCTAAGAA 103698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755030224998400