Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq44944 109 4e-19 seq14479 109 4e-19 seq16149 100 2e-16 seq15779 87.8 1e-12 seq13717 86.0 4e-12 >seq44944 Length=25146 Score = 109 bits (120), Expect = 4e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 || ||||| || |||||||||| || | || || |||| ||||||||||| || || || Sbjct 20362 TCCTTCTGGATATTGTAGTCGGCCAAGGTG-CGACCGTCCTCCAACTGCTTCCCCGCAAA 20420 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||| |||| ||||||||| || | || ||||||||| ||||| ||| | || Sbjct 20421 AATCAGCCTCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTAGTCTTCACATT 20480 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | |||| ||| | || || |||| ||||| || |||||||| | || ||||| Sbjct 20481 GTCGATCGTGTCGCTGCTCTCCACTTCCAGGGTGATCGTCTTGCCGGTCAACGTCTTCAC 20540 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 20541 AAAGATCTGCAT 20552 >seq14479 Length=56811 Score = 109 bits (120), Expect = 4e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 || ||||| || |||||||||| || | || || |||| ||||||||||| || || || Sbjct 50494 TCCTTCTGGATATTGTAGTCGGCCAAGGTG-CGACCGTCCTCCAACTGCTTCCCAGCAAA 50552 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || |||| ||||||||| ||| | || ||||||||| ||||| ||| | || Sbjct 50553 GATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTAGTCTTCACATT 50612 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | |||| ||| | || || |||| ||||| || |||||||| | || ||||| Sbjct 50613 GTCGATCGTGTCGCTGCTCTCCACTTCCAGGGTGATCGTCTTGCCGGTCAACGTCTTCAC 50672 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 50673 AAAGATCTGCAT 50684 >seq16149 Length=224952 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | || ||| ||||| ||||||||||||| Sbjct 103689 CCACCGCGTAGACGGAGGACAAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCG 103630 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| || | ||| || || ||||| ||||| || || |||||| || Sbjct 103629 AGTGTACGGCCGTCTTCAAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCGGGAGGG 103570 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| || || ||| | || | | || | |||| ||||| || Sbjct 103569 ATGCCTTCCTTGTCTTGAATTTTGGTCTTCACATTGTCGATGGTGTCGGAGGATTCAACC 103510 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| || || || || || || || |||||||| || ||||||||| Sbjct 103509 TCCAATGTTATCGTCTTCCCCGTTAGGGTTTTCACGAATATCTGCATC 103462 >seq15779 Length=145502 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| || ||||| ||||||||||| | || || |||| Sbjct 121911 AGAACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCTAGGGTGCGACCGTCT 121852 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| ||||| || || || |||| |||||||| ||| | | |||||||| Sbjct 121851 TCAAGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGGATCCCTTCCTTGTCT 121792 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | | || | |||| |||||| || | |||||||| Sbjct 121791 TGGATCTTTGTCTTGACATTGTCGATAGTGTCGGAACTTTCGACCTCAAGAGTGATGGTC 121732 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||||||| | ||||| || ||||| |||||| Sbjct 121731 TTGCCGGTTAAGGTTTTGACGAAGATTTGCATC 121699 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| || ||||| || | || | ||| | || ||||||||||| || || || Sbjct 122803 TTCCTTCTGAATATTGTAATCAGCCAACGTACGCCCATCCTCCAACTGCTTTCCCGCAAA 122744 Query 34258 AATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGAT 34316 ||||||| ||||||||| | |||| | | |||||| || ||||| ||| | || Sbjct 122743 GATGAGCCTCTGCTGGTCCGGCGGG-ATACCCTCCTTATCCTGGATCTTCGTCTTCACAT 122685 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | |||| ||| | ||||| || | ||||| || || || || | || || | Sbjct 122684 TGTCGATCGTGTCGCTGCTCTCGACTTCAAGAGTGATAGTCTTCCCAGTCAAGGTCTTGA 122625 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 122624 CAAAGATCTGCAT 122612 >seq13717 Length=68558 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || || ||||| ||||||||||| | || |||| |||| Sbjct 35023 AGCACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGTGTACGGCCGTCT 35082 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || ||||||||||| || || ||||| || | || |||||||| Sbjct 35083 TCAAGCTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGAATGCCTTCCTTGTCT 35142 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| || | || | | || | || | ||||| || || | || || || Sbjct 35143 TGGATCTTGGTTTTCACATTGTCGATGGTGTCTGAGGATTCAACCTCTAGGGTTATCGTC 35202 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || |||||||| ||||||||||| Sbjct 35203 TTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 35234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322894468705280