Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq16048 87.8 2e-12
seq15946 87.8 2e-12
seq11586 87.8 2e-12
seq15936 84.2 2e-11
>seq16048
Length=246288
Score = 87.8 bits (96), Expect = 2e-12
Identities = 120/165 (73%), Gaps = 2/165 (1%)
Strand=Plus/Minus
Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262
||| ||||| || || ||||| ||||| || | | ||| ||||| ||||| || |||||
Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455
Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322
|| ||||| | ||| || ||||| | |||||| || || ||| || ||||||||
Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 204395
Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGT-TCTCCAAACG 14366
||| ||||| || ||||| || | ||||| | || ||||||
Sbjct 204394 TATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACG 204351
>seq15946
Length=172941
Score = 87.8 bits (96), Expect = 2e-12
Identities = 120/165 (73%), Gaps = 2/165 (1%)
Strand=Plus/Minus
Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262
||| ||||| || || ||||| ||||| || | | ||| ||||| ||||| || |||||
Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520
Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322
|| ||||| | ||| || ||||| | |||||| || || ||| || ||||||||
Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 58460
Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGT-TCTCCAAACG 14366
||| ||||| || ||||| || | ||||| | || ||||||
Sbjct 58459 TATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACG 58416
>seq11586
Length=26096
Score = 87.8 bits (96), Expect = 2e-12
Identities = 120/165 (73%), Gaps = 2/165 (1%)
Strand=Plus/Minus
Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262
||| ||||| || || ||||| ||||| || | | ||| ||||| ||||| || |||||
Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278
Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322
|| ||||| | ||| || ||||| | |||||| || || ||| || ||||||||
Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 4218
Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGT-TCTCCAAACG 14366
||| ||||| || ||||| || | ||||| | || ||||||
Sbjct 4217 TATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACG 4174
>seq15936
Length=155017
Score = 84.2 bits (92), Expect = 2e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263
|| ||||||||||| || || || ||||| || |||||| |||||||| ||||| ||
Sbjct 23978 CAGGCAAAATCACAGTGTAGACCTTCATCCCTGGAAATAAGCTCGTTTGAGAATGTCAAA 23919
Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302
||||||||||| || | || || | ||||||||| |||
Sbjct 23918 CCTGGCATCAACCCCCTCTTCTTAAGCCAAAATATGGCA 23880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482073750019840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |