Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq16048 87.8 2e-12 seq15946 87.8 2e-12 seq11586 87.8 2e-12 seq15936 84.2 2e-11 >seq16048 Length=246288 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| ||||| || || ||||| ||||| || | | ||| ||||| ||||| || ||||| Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322 || ||||| | ||| || ||||| | |||||| || || ||| || |||||||| Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 204395 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGT-TCTCCAAACG 14366 ||| ||||| || ||||| || | ||||| | || |||||| Sbjct 204394 TATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACG 204351 >seq15946 Length=172941 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| ||||| || || ||||| ||||| || | | ||| ||||| ||||| || ||||| Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322 || ||||| | ||| || ||||| | |||||| || || ||| || |||||||| Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 58460 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGT-TCTCCAAACG 14366 ||| ||||| || ||||| || | ||||| | || |||||| Sbjct 58459 TATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACG 58416 >seq11586 Length=26096 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| ||||| || || ||||| ||||| || | | ||| ||||| ||||| || ||||| Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322 || ||||| | ||| || ||||| | |||||| || || ||| || |||||||| Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 4218 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGT-TCTCCAAACG 14366 ||| ||||| || ||||| || | ||||| | || |||||| Sbjct 4217 TATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACG 4174 >seq15936 Length=155017 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||||||||| || || || ||||| || |||||| |||||||| ||||| || Sbjct 23978 CAGGCAAAATCACAGTGTAGACCTTCATCCCTGGAAATAAGCTCGTTTGAGAATGTCAAA 23919 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302 ||||||||||| || | || || | ||||||||| ||| Sbjct 23918 CCTGGCATCAACCCCCTCTTCTTAAGCCAAAATATGGCA 23880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482073750019840