Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq15394 82.4 6e-11 >seq15394 Length=94532 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/234 (68%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 24829 ATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCG 24888 ||||||||||| || || |||||| |||| || ||||| |||||| | || |||||||| Sbjct 44165 ATCATGCAGATCTTCGTGAAAACCCTAACTGGGAAAACAATAACCCTAGAAGTCGAATCA 44224 Query 24889 AGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCG----TACCGGT 24944 |||| | || | | | || || ||| ||| |||||| | | || | Sbjct 44225 TCGGACACAATCGACAATTTGAAATCGAAGATT----CAAGAGAAGGAGGGGATTCCAGC 44280 Query 24945 TGACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGA 25004 || || ||| | |||| | || || ||||| || |||||| | || ||| || Sbjct 44281 GGATCAACAAAGGCTAATCTTCGCTGGAAAACAGCTCGAAGATGGCCGAACAATGGCGGA 44340 Query 25005 TTACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 |||| ||| ||||| || | |||||||| || || |||||| | || ||||| Sbjct 44341 CTACAACATCCAGAAGGAATCGACGCTTCACTTGGTTTTACGACTCCGTGGAGG 44394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418074137768960