Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq16048 127 3e-24 seq15946 123 3e-23 seq11586 123 3e-23 seq16162 89.7 6e-13 >seq16048 Length=246288 Score = 127 bits (140), Expect = 3e-24 Identities = 386/587 (66%), Gaps = 17/587 (3%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || |||||||| ||||||||||| | | ||| | ||| || || || || | Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| || |||||||||||||||||||| || | ||| || |||||||| Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 204395 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT--CATGT 33758 || || || || ||||| || |||| ||||| || | || | | | ||| Sbjct 204394 TATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA--CGTCTCAGAACCATCA 204337 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| |||||||| |||||||| || || ||| ||||| || | ||| | Sbjct 204336 ATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACGA 204277 Query 33819 AAGAGATAGtttttttCATT-ACTA-TCTTTAACATAAGTATCGATCAAAAGACTATACA 33876 || | || | |||| || | || | || ||| || || | |||||| |||| Sbjct 204276 AACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACA 204219 Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 | ||||||||||| || ||||| || |||||||| ||||| || | || |||| | Sbjct 204218 TCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGA 204159 Query 33937 TCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 ||| | || | || || || | || || || || |||||| || | Sbjct 204158 GCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGG 204099 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGT---GTTAGTTTAT 34050 |||| || || | || || | || |||| || ||||| ||| | | ||| | Sbjct 204098 CAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATCGTC-GGTCAAGGTCGTTGA- 204041 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| | | | |||| || | ||| |||||||| | |||||||| ||||| || | Sbjct 204040 -CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGG 203982 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 34157 | || || ||||| | |||||| | | || || |||||||| ||| Sbjct 203981 CTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 203935 >seq15946 Length=172941 Score = 123 bits (136), Expect = 3e-23 Identities = 385/587 (66%), Gaps = 17/587 (3%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || |||||||| ||||||||||| | | ||| | ||| || || || || | Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| || |||||||||||||||||||| || | ||| || |||||||| Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 58460 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT--CATGT 33758 || || || || ||||| || |||| ||||| || | || | | | ||| Sbjct 58459 TATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA--CGTCTCAGAACCATCA 58402 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| |||||||| |||||||| || || ||| ||||| || | ||| | Sbjct 58401 ATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACGA 58342 Query 33819 AAGAGATAGtttttttCATT-ACTA-TCTTTAACATAAGTATCGATCAAAAGACTATACA 33876 || | || | |||| || | || | || ||| || || | |||||| |||| Sbjct 58341 AACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACA 58284 Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 | ||||||||||| || ||||| || |||||||| ||||| || | || |||| | Sbjct 58283 TCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGA 58224 Query 33937 TCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 ||| | || | || || || | || || || || |||||| || | Sbjct 58223 GCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGG 58164 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGT---GTTAGTTTAT 34050 |||| || || | || || | || |||| || | ||| ||| | | ||| | Sbjct 58163 CAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTC-GGTCAAGGTCGTTGA- 58106 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| | | | |||| || | ||| |||||||| | |||||||| ||||| || | Sbjct 58105 -CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGG 58047 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 34157 | || || ||||| | |||||| | | || || |||||||| ||| Sbjct 58046 CTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 58000 >seq11586 Length=26096 Score = 123 bits (136), Expect = 3e-23 Identities = 385/587 (66%), Gaps = 17/587 (3%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || |||||||| ||||||||||| | | ||| | ||| || || || || | Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| || |||||||||||||||||||| || | ||| || |||||||| Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 4218 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT--CATGT 33758 || || || || ||||| || |||| ||||| || | || | | | ||| Sbjct 4217 TATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA--CGTCTCAGAACCATCA 4160 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| |||||||| |||||||| || || ||| ||||| || | ||| | Sbjct 4159 ATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACGA 4100 Query 33819 AAGAGATAGtttttttCATT-ACTA-TCTTTAACATAAGTATCGATCAAAAGACTATACA 33876 || | || | |||| || | || | || ||| || || | |||||| |||| Sbjct 4099 AACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACA 4042 Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 | ||||||||||| || ||||| || |||||||| ||||| || | || |||| | Sbjct 4041 TCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGA 3982 Query 33937 TCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 ||| | || | || || || | || || || || |||||| || | Sbjct 3981 GCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGG 3922 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGT---GTTAGTTTAT 34050 |||| || || | || || | || |||| || | ||| ||| | | ||| | Sbjct 3921 CAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTC-GGTCAAGGTCGTTGA- 3864 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| | | | |||| || | ||| |||||||| | |||||||| ||||| || | Sbjct 3863 -CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGG 3805 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 34157 | || || ||||| | |||||| | | || || |||||||| ||| Sbjct 3804 CTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 3758 >seq16162 Length=245457 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || ||||| || | ||| || ||||| || || ||||| | | ||| | | || | Sbjct 40932 GTGCCAGCATTGAAGAGGGTCGGGGAAGCATGAGTGAACCACCTCTGAGACATGAAATGG 40873 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || || | || || || || ||||| | ||| || || ||||| || | ||| ||| Sbjct 40872 TATGTTTTGATTGCAGACTCAATATCGTCCTTATGGATACCGACTGCAACTCTCATCAAC 40813 Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842 || |||||||| || || |||| || | | ||||||| || ||| | || | Sbjct 40812 ATATGCTGAGGCCTCTCCACAACCTTTCCACTAACCTTCAACAGATACGATCTCTCGAGG 40753 Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| ||||||||||| | || |||||| || |||||||| || Sbjct 40752 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGGTCGTAAATGAT 40706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629462634800640