Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq16048 84.2 2e-11
seq15946 84.2 2e-11
seq11586 84.2 2e-11
>seq16048
Length=246288
Score = 84.2 bits (92), Expect = 2e-11
Identities = 107/145 (74%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688
||| ||||| || || || | ||| ||||| | | || |||||||| || || |||||
Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455
Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA-AATGAACCAGAAAAGA 11747
|| ||||| | ||| || ||||| | |||||| || || ||| || ||||||||||
Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGA 204396
Query 11748 ATATTCCCTCCACAGCTGCAAATGC 11772
|||| ||||| ||| ||||| ||
Sbjct 204395 ATATCCCCTCGACACACGCAAAAGC 204371
>seq15946
Length=172941
Score = 84.2 bits (92), Expect = 2e-11
Identities = 107/145 (74%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688
||| ||||| || || || | ||| ||||| | | || |||||||| || || |||||
Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520
Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA-AATGAACCAGAAAAGA 11747
|| ||||| | ||| || ||||| | |||||| || || ||| || ||||||||||
Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGA 58461
Query 11748 ATATTCCCTCCACAGCTGCAAATGC 11772
|||| ||||| ||| ||||| ||
Sbjct 58460 ATATCCCCTCGACACACGCAAAAGC 58436
>seq11586
Length=26096
Score = 84.2 bits (92), Expect = 2e-11
Identities = 107/145 (74%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688
||| ||||| || || || | ||| ||||| | | || |||||||| || || |||||
Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278
Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA-AATGAACCAGAAAAGA 11747
|| ||||| | ||| || ||||| | |||||| || || ||| || ||||||||||
Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGA 4219
Query 11748 ATATTCCCTCCACAGCTGCAAATGC 11772
|||| ||||| ||| ||||| ||
Sbjct 4218 ATATCCCCTCGACACACGCAAAAGC 4194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468260739422720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |