Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq16048 138 1e-27
seq15946 138 1e-27
seq11586 138 1e-27
seq16162 89.7 7e-13
seq16271 86.0 8e-12
>seq16048
Length=246288
Score = 138 bits (152), Expect = 1e-27
Identities = 242/344 (70%), Gaps = 10/344 (3%)
Strand=Plus/Minus
Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216
||| || || |||||||| ||||||||||| | | ||| | ||| || || || || |
Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455
Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGA 36275
|| ||||| || |||||||||||||||||||| || | |||| | ||| ||||||||
Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 204396
Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT--CATG 36333
| || || || || |||||| || |||| ||||| || | || | | | |||
Sbjct 204395 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA--CGTCTCAGAACCATC 204338
Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393
||||| |||||||| |||||||| || || ||| || ||||| | ||||
Sbjct 204337 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 204278
Query 36394 AAAGAGATAGtttttttCATT-ACTA-TCTTTAACATATGTATCAATCAAAAGACTATAC 36451
||| | || | |||| || | || | || ||| || |||| |||||| |||
Sbjct 204277 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 204220
Query 36452 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495
|| ||||||||||| || ||||| || || ||||| ||||| ||
Sbjct 204219 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAA 204176
>seq15946
Length=172941
Score = 138 bits (152), Expect = 1e-27
Identities = 242/344 (70%), Gaps = 10/344 (3%)
Strand=Plus/Minus
Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216
||| || || |||||||| ||||||||||| | | ||| | ||| || || || || |
Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520
Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGA 36275
|| ||||| || |||||||||||||||||||| || | |||| | ||| ||||||||
Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 58461
Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT--CATG 36333
| || || || || |||||| || |||| ||||| || | || | | | |||
Sbjct 58460 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA--CGTCTCAGAACCATC 58403
Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393
||||| |||||||| |||||||| || || ||| || ||||| | ||||
Sbjct 58402 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 58343
Query 36394 AAAGAGATAGtttttttCATT-ACTA-TCTTTAACATATGTATCAATCAAAAGACTATAC 36451
||| | || | |||| || | || | || ||| || |||| |||||| |||
Sbjct 58342 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 58285
Query 36452 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495
|| ||||||||||| || ||||| || || ||||| ||||| ||
Sbjct 58284 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAA 58241
>seq11586
Length=26096
Score = 138 bits (152), Expect = 1e-27
Identities = 242/344 (70%), Gaps = 10/344 (3%)
Strand=Plus/Minus
Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216
||| || || |||||||| ||||||||||| | | ||| | ||| || || || || |
Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278
Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGA 36275
|| ||||| || |||||||||||||||||||| || | |||| | ||| ||||||||
Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 4219
Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT--CATG 36333
| || || || || |||||| || |||| ||||| || | || | | | |||
Sbjct 4218 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA--CGTCTCAGAACCATC 4161
Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393
||||| |||||||| |||||||| || || ||| || ||||| | ||||
Sbjct 4160 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 4101
Query 36394 AAAGAGATAGtttttttCATT-ACTA-TCTTTAACATATGTATCAATCAAAAGACTATAC 36451
||| | || | |||| || | || | || ||| || |||| |||||| |||
Sbjct 4100 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 4043
Query 36452 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495
|| ||||||||||| || ||||| || || ||||| ||||| ||
Sbjct 4042 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAA 3999
>seq16162
Length=245457
Score = 89.7 bits (98), Expect = 7e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515
|| || ||||| || | ||| || ||||| || || ||||| | | ||| | | || |
Sbjct 40932 GTGCCAGCATTGAAGAGGGTCGGGGAAGCATGAGTGAACCACCTCTGAGACATGAAATGG 40873
Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575
|| || | || || || || ||||| | ||| || || ||||| || | ||| |||
Sbjct 40872 TATGTTTTGATTGCAGACTCAATATCGTCCTTATGGATACCGACTGCAACTCTCATCAAC 40813
Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635
|| |||||||| || || || | ||| | | ||||||| || ||| | || |
Sbjct 40812 ATATGCTGAGGCCTCTCCACAACCTTTCCACTAACCTTCAACAGATACGATCTCTCGAGG 40753
Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682
||||| ||||||||||| | || |||||| || |||||||| ||
Sbjct 40752 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGGTCGTAAATGAT 40706
>seq16271
Length=354655
Score = 86.0 bits (94), Expect = 8e-12
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274
|||||| ||||| | |||| |||||||| ||| | || | || ||| ||| |||| ||
Sbjct 278735 TCCTCCTTGATCAACATATCGAGCGGTGTCATTGAACACCCGCAGCATCGGAGTAATGCC 278794
Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334
||| |||| ||||| || || || || || || | ||||||||||| ||| ||
Sbjct 278795 ATTTGATGCTCCATTTGTGCCACGAATGTAACTGCCTGTGGCACGAATATTGTGAATAGA 278854
Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394
| ||| || || || || |||| || | || ||| || || ||||| || ||
Sbjct 278855 GACACCAATACCTCCAGCAGATTTACTTATAACAGCACATTCCTTCAATGTATCGTAAAT 278914
Query 66395 GCCCTCTATACTATCATCCATCATG 66419
|||||| || || || || |||||
Sbjct 278915 GCCCTCGATGCTGTCCTCTTTCATG 278939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657801853809920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |