Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq16048 138 1e-27 seq15946 138 1e-27 seq11586 138 1e-27 seq16162 89.7 7e-13 seq16271 86.0 8e-12 >seq16048 Length=246288 Score = 138 bits (152), Expect = 1e-27 Identities = 242/344 (70%), Gaps = 10/344 (3%) Strand=Plus/Minus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| || || |||||||| ||||||||||| | | ||| | ||| || || || || | Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGA 36275 || ||||| || |||||||||||||||||||| || | |||| | ||| |||||||| Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 204396 Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT--CATG 36333 | || || || || |||||| || |||| ||||| || | || | | | ||| Sbjct 204395 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA--CGTCTCAGAACCATC 204338 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| |||||||| |||||||| || || ||| || ||||| | |||| Sbjct 204337 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 204278 Query 36394 AAAGAGATAGtttttttCATT-ACTA-TCTTTAACATATGTATCAATCAAAAGACTATAC 36451 ||| | || | |||| || | || | || ||| || |||| |||||| ||| Sbjct 204277 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 204220 Query 36452 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 || ||||||||||| || ||||| || || ||||| ||||| || Sbjct 204219 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAA 204176 >seq15946 Length=172941 Score = 138 bits (152), Expect = 1e-27 Identities = 242/344 (70%), Gaps = 10/344 (3%) Strand=Plus/Minus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| || || |||||||| ||||||||||| | | ||| | ||| || || || || | Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGA 36275 || ||||| || |||||||||||||||||||| || | |||| | ||| |||||||| Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 58461 Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT--CATG 36333 | || || || || |||||| || |||| ||||| || | || | | | ||| Sbjct 58460 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA--CGTCTCAGAACCATC 58403 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| |||||||| |||||||| || || ||| || ||||| | |||| Sbjct 58402 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 58343 Query 36394 AAAGAGATAGtttttttCATT-ACTA-TCTTTAACATATGTATCAATCAAAAGACTATAC 36451 ||| | || | |||| || | || | || ||| || |||| |||||| ||| Sbjct 58342 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 58285 Query 36452 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 || ||||||||||| || ||||| || || ||||| ||||| || Sbjct 58284 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAA 58241 >seq11586 Length=26096 Score = 138 bits (152), Expect = 1e-27 Identities = 242/344 (70%), Gaps = 10/344 (3%) Strand=Plus/Minus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| || || |||||||| ||||||||||| | | ||| | ||| || || || || | Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGA 36275 || ||||| || |||||||||||||||||||| || | |||| | ||| |||||||| Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 4219 Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT--CATG 36333 | || || || || |||||| || |||| ||||| || | || | | | ||| Sbjct 4218 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA--CGTCTCAGAACCATC 4161 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| |||||||| |||||||| || || ||| || ||||| | |||| Sbjct 4160 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 4101 Query 36394 AAAGAGATAGtttttttCATT-ACTA-TCTTTAACATATGTATCAATCAAAAGACTATAC 36451 ||| | || | |||| || | || | || ||| || |||| |||||| ||| Sbjct 4100 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 4043 Query 36452 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 || ||||||||||| || ||||| || || ||||| ||||| || Sbjct 4042 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAA 3999 >seq16162 Length=245457 Score = 89.7 bits (98), Expect = 7e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || ||||| || | ||| || ||||| || || ||||| | | ||| | | || | Sbjct 40932 GTGCCAGCATTGAAGAGGGTCGGGGAAGCATGAGTGAACCACCTCTGAGACATGAAATGG 40873 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || || | || || || || ||||| | ||| || || ||||| || | ||| ||| Sbjct 40872 TATGTTTTGATTGCAGACTCAATATCGTCCTTATGGATACCGACTGCAACTCTCATCAAC 40813 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 || |||||||| || || || | ||| | | ||||||| || ||| | || | Sbjct 40812 ATATGCTGAGGCCTCTCCACAACCTTTCCACTAACCTTCAACAGATACGATCTCTCGAGG 40753 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||||| ||||||||||| | || |||||| || |||||||| || Sbjct 40752 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGGTCGTAAATGAT 40706 >seq16271 Length=354655 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | |||| |||||||| ||| | || | || ||| ||| |||| || Sbjct 278735 TCCTCCTTGATCAACATATCGAGCGGTGTCATTGAACACCCGCAGCATCGGAGTAATGCC 278794 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| |||| ||||| || || || || || || | ||||||||||| ||| || Sbjct 278795 ATTTGATGCTCCATTTGTGCCACGAATGTAACTGCCTGTGGCACGAATATTGTGAATAGA 278854 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| || || || || |||| || | || ||| || || ||||| || || Sbjct 278855 GACACCAATACCTCCAGCAGATTTACTTATAACAGCACATTCCTTCAATGTATCGTAAAT 278914 Query 66395 GCCCTCTATACTATCATCCATCATG 66419 |||||| || || || || ||||| Sbjct 278915 GCCCTCGATGCTGTCCTCTTTCATG 278939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657801853809920