Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_003494.1
Length=111362
Score E
Sequences producing significant alignments: (Bits) Value
seq16048 82.4 5e-11
>seq16048
Length=246288
Score = 82.4 bits (90), Expect = 5e-11
Identities = 183/274 (67%), Gaps = 3/274 (1%)
Strand=Plus/Plus
Query 22328 ACCCACATTTGTGGGCCATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGG 22387
|||| || | |||| ||||||||||| |||| || || |||||||| | ||| || |
Sbjct 203952 ACCCGCAAATCTGGGAAATGTACAAGAAAGCCGAAGCATCGTTTTGGACGGCTGAAGAAG 204011
Query 22388 TGGATCTTAGTACTGATGTACGCCATTGGACAGAAAAACTGACCGAGGCTGAGCGCAGGT 22447
| |||||| || |||| || ||| || | ||||||| | ||| ||| |
Sbjct 204012 TCGATCTTTCACAAGACTTACGTCACTGGTCAACGACCTTGACCGACGATGAACGCCATT 204071
Query 22448 TCATGTCTCACATACTGGCATTCTTTGCAATGGCAGATGGCATTGTAGGCGACAACCTTG 22507
|||| ||||| | || || |||||||| | ||||| ||||| ||| ||||| |
Sbjct 204072 TCATCACTCACGTTCTCGCCTTCTTTGCCGCATCTGATGGGATTGTTCTCGAGAACCTCG 204131
Query 22508 TGTGCAATTTCGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTC 22567
||| ||| || || || | | || ||||| | || || || |||||||
Sbjct 204132 CGTGTCGGTTCATGAAGGAGATT---CAGCTCCCCGAAGCGCGTGCGTTTTACGGGTTTC 204188
Query 22568 AGGTGGCAATGGAAAATATACATGCTGAAATGTA 22601
|| | || || || ||||| ||| | || |||||
Sbjct 204189 AGATTGCGATTGAGAATATTCATTCGGAGATGTA 204222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356037846074464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |