Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq16048 82.4 5e-11 >seq16048 Length=246288 Score = 82.4 bits (90), Expect = 5e-11 Identities = 183/274 (67%), Gaps = 3/274 (1%) Strand=Plus/Plus Query 22328 ACCCACATTTGTGGGCCATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGG 22387 |||| || | |||| ||||||||||| |||| || || |||||||| | ||| || | Sbjct 203952 ACCCGCAAATCTGGGAAATGTACAAGAAAGCCGAAGCATCGTTTTGGACGGCTGAAGAAG 204011 Query 22388 TGGATCTTAGTACTGATGTACGCCATTGGACAGAAAAACTGACCGAGGCTGAGCGCAGGT 22447 | |||||| || |||| || ||| || | ||||||| | ||| ||| | Sbjct 204012 TCGATCTTTCACAAGACTTACGTCACTGGTCAACGACCTTGACCGACGATGAACGCCATT 204071 Query 22448 TCATGTCTCACATACTGGCATTCTTTGCAATGGCAGATGGCATTGTAGGCGACAACCTTG 22507 |||| ||||| | || || |||||||| | ||||| ||||| ||| ||||| | Sbjct 204072 TCATCACTCACGTTCTCGCCTTCTTTGCCGCATCTGATGGGATTGTTCTCGAGAACCTCG 204131 Query 22508 TGTGCAATTTCGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTC 22567 ||| ||| || || || | | || ||||| | || || || ||||||| Sbjct 204132 CGTGTCGGTTCATGAAGGAGATT---CAGCTCCCCGAAGCGCGTGCGTTTTACGGGTTTC 204188 Query 22568 AGGTGGCAATGGAAAATATACATGCTGAAATGTA 22601 || | || || || ||||| ||| | || ||||| Sbjct 204189 AGATTGCGATTGAGAATATTCATTCGGAGATGTA 204222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356037846074464