Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq15946 141 1e-28
seq11586 141 1e-28
seq16048 136 6e-27
seq16271 95.1 2e-14
seq16162 95.1 2e-14
>seq15946
Length=172941
Score = 141 bits (156), Expect = 1e-28
Identities = 391/587 (67%), Gaps = 17/587 (3%)
Strand=Plus/Minus
Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018
||| || || |||||||| ||||||||||| | | ||| ||||| || || || || |
Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520
Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGA 50077
|| ||||| || |||||||||||||||||||| || | |||| || |||||||||||
Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 58461
Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG--TCATG 50135
| || || || || ||||| || | || ||||| || ||| | | | | |||
Sbjct 58460 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCA-AAC-GTCTCAGAACCATC 58403
Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195
||||| |||||||| |||||||| || || ||| ||||| || | |||
Sbjct 58402 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 58343
Query 50196 AAAGAGATAGtttttttC-ATTAC-TATCTTTAACATAAGTATCGATCAAAAGACTATAC 50253
||| | || | ||| | || ||| | || ||| || || | |||||| |||
Sbjct 58342 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 58285
Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313
|| ||||||||||| || ||||| || |||||||| ||||| || | || ||||
Sbjct 58284 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGG 58225
Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373
| ||| | || | || || || | || || || || || ||| ||
Sbjct 58224 AGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCG 58165
Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTG--GGT---GTTAGTTTAT 50428
||||| || || | || || | || ||||| ||| ||| ||| | | ||| |
Sbjct 58164 GCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGA- 58106
Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488
||| | | | |||| || | ||| |||||||| | |||||||| ||||| || |
Sbjct 58105 -CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGG 58047
Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535
| || || ||||| | |||||| | | || || |||||||| |||
Sbjct 58046 CTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 58000
>seq11586
Length=26096
Score = 141 bits (156), Expect = 1e-28
Identities = 391/587 (67%), Gaps = 17/587 (3%)
Strand=Plus/Minus
Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018
||| || || |||||||| ||||||||||| | | ||| ||||| || || || || |
Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278
Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGA 50077
|| ||||| || |||||||||||||||||||| || | |||| || |||||||||||
Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 4219
Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG--TCATG 50135
| || || || || ||||| || | || ||||| || ||| | | | | |||
Sbjct 4218 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCA-AAC-GTCTCAGAACCATC 4161
Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195
||||| |||||||| |||||||| || || ||| ||||| || | |||
Sbjct 4160 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 4101
Query 50196 AAAGAGATAGtttttttC-ATTAC-TATCTTTAACATAAGTATCGATCAAAAGACTATAC 50253
||| | || | ||| | || ||| | || ||| || || | |||||| |||
Sbjct 4100 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 4043
Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313
|| ||||||||||| || ||||| || |||||||| ||||| || | || ||||
Sbjct 4042 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGG 3983
Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373
| ||| | || | || || || | || || || || || ||| ||
Sbjct 3982 AGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCG 3923
Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTG--GGT---GTTAGTTTAT 50428
||||| || || | || || | || ||||| ||| ||| ||| | | ||| |
Sbjct 3922 GCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGA- 3864
Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488
||| | | | |||| || | ||| |||||||| | |||||||| ||||| || |
Sbjct 3863 -CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGG 3805
Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535
| || || ||||| | |||||| | | || || |||||||| |||
Sbjct 3804 CTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 3758
>seq16048
Length=246288
Score = 136 bits (150), Expect = 6e-27
Identities = 390/587 (66%), Gaps = 17/587 (3%)
Strand=Plus/Minus
Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018
||| || || |||||||| ||||||||||| | | ||| ||||| || || || || |
Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455
Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGA 50077
|| ||||| || |||||||||||||||||||| || | |||| || |||||||||||
Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 204396
Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG--TCATG 50135
| || || || || ||||| || | || ||||| || ||| | | | | |||
Sbjct 204395 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCA-AAC-GTCTCAGAACCATC 204338
Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195
||||| |||||||| |||||||| || || ||| ||||| || | |||
Sbjct 204337 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 204278
Query 50196 AAAGAGATAGtttttttC-ATTAC-TATCTTTAACATAAGTATCGATCAAAAGACTATAC 50253
||| | || | ||| | || ||| | || ||| || || | |||||| |||
Sbjct 204277 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 204220
Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313
|| ||||||||||| || ||||| || |||||||| ||||| || | || ||||
Sbjct 204219 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGG 204160
Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373
| ||| | || | || || || | || || || || || ||| ||
Sbjct 204159 AGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCG 204100
Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAAT---GTTTTTCGTTGG--GTGTTAGTTTAT 50428
||||| || || | || || | || |||| ||| |||| || | | ||| |
Sbjct 204099 GCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATCGTCGGTCAAGGTCGTTGA- 204041
Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488
||| | | | |||| || | ||| |||||||| | |||||||| ||||| || |
Sbjct 204040 -CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGG 203982
Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535
| || || ||||| | |||||| | | || || |||||||| |||
Sbjct 203981 CTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 203935
>seq16271
Length=354655
Score = 95.1 bits (104), Expect = 2e-14
Identities = 144/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153
|||||| ||||| | |||| |||||||| ||| | || | || ||| ||| |||| ||
Sbjct 278735 TCCTCCTTGATCAACATATCGAGCGGTGTCATTGAACACCCGCAGCATCGGAGTAATGCC 278794
Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213
||| |||| ||||| || || || || || || ||||||||||||| ||| ||
Sbjct 278795 ATTTGATGCTCCATTTGTGCCACGAATGTAACTGCCTGTGGCACGAATATTGTGAATAGA 278854
Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273
| ||| || || || || |||| || | || ||| || || ||||| || ||
Sbjct 278855 GACACCAATACCTCCAGCAGATTTACTTATAACAGCACATTCCTTCAATGTATCGTAAAT 278914
Query 80274 GCCCTCTATGCTATCATCAATCATG 80298
|||||| ||||| || || |||||
Sbjct 278915 GCCCTCGATGCTGTCCTCTTTCATG 278939
>seq16162
Length=245457
Score = 95.1 bits (104), Expect = 2e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394
|| || ||||| || | ||| || ||||| || || ||||| | | ||||| | || |
Sbjct 40932 GTGCCAGCATTGAAGAGGGTCGGGGAAGCATGAGTGAACCACCTCTGAGACATGAAATGG 40873
Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454
|| || | || || || || ||||| | ||| || || || || || | ||| |||
Sbjct 40872 TATGTTTTGATTGCAGACTCAATATCGTCCTTATGGATACCGACTGCAACTCTCATCAAC 40813
Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514
|| |||||||| || || || | ||| | | | ||||||| || ||| | || |
Sbjct 40812 ATATGCTGAGGCCTCTCCACAACCTTTCCACTAACCTTCAACAGATACGATCTCTCGAGG 40753
Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561
||||| ||||||||||| | || |||||| || |||||||| ||
Sbjct 40752 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGGTCGTAAATGAT 40706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717863983704320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |