Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq15946 141 1e-28 seq11586 141 1e-28 seq16048 136 6e-27 seq16271 95.1 2e-14 seq16162 95.1 2e-14 >seq15946 Length=172941 Score = 141 bits (156), Expect = 1e-28 Identities = 391/587 (67%), Gaps = 17/587 (3%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| || || |||||||| ||||||||||| | | ||| ||||| || || || || | Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGA 50077 || ||||| || |||||||||||||||||||| || | |||| || ||||||||||| Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 58461 Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG--TCATG 50135 | || || || || ||||| || | || ||||| || ||| | | | | ||| Sbjct 58460 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCA-AAC-GTCTCAGAACCATC 58403 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| |||||||| |||||||| || || ||| ||||| || | ||| Sbjct 58402 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 58343 Query 50196 AAAGAGATAGtttttttC-ATTAC-TATCTTTAACATAAGTATCGATCAAAAGACTATAC 50253 ||| | || | ||| | || ||| | || ||| || || | |||||| ||| Sbjct 58342 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 58285 Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313 || ||||||||||| || ||||| || |||||||| ||||| || | || |||| Sbjct 58284 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGG 58225 Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373 | ||| | || | || || || | || || || || || ||| || Sbjct 58224 AGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCG 58165 Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTG--GGT---GTTAGTTTAT 50428 ||||| || || | || || | || ||||| ||| ||| ||| | | ||| | Sbjct 58164 GCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGA- 58106 Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488 ||| | | | |||| || | ||| |||||||| | |||||||| ||||| || | Sbjct 58105 -CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGG 58047 Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535 | || || ||||| | |||||| | | || || |||||||| ||| Sbjct 58046 CTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 58000 >seq11586 Length=26096 Score = 141 bits (156), Expect = 1e-28 Identities = 391/587 (67%), Gaps = 17/587 (3%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| || || |||||||| ||||||||||| | | ||| ||||| || || || || | Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGA 50077 || ||||| || |||||||||||||||||||| || | |||| || ||||||||||| Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 4219 Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG--TCATG 50135 | || || || || ||||| || | || ||||| || ||| | | | | ||| Sbjct 4218 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCA-AAC-GTCTCAGAACCATC 4161 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| |||||||| |||||||| || || ||| ||||| || | ||| Sbjct 4160 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 4101 Query 50196 AAAGAGATAGtttttttC-ATTAC-TATCTTTAACATAAGTATCGATCAAAAGACTATAC 50253 ||| | || | ||| | || ||| | || ||| || || | |||||| ||| Sbjct 4100 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 4043 Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313 || ||||||||||| || ||||| || |||||||| ||||| || | || |||| Sbjct 4042 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGG 3983 Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373 | ||| | || | || || || | || || || || || ||| || Sbjct 3982 AGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCG 3923 Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTG--GGT---GTTAGTTTAT 50428 ||||| || || | || || | || ||||| ||| ||| ||| | | ||| | Sbjct 3922 GCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGA- 3864 Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488 ||| | | | |||| || | ||| |||||||| | |||||||| ||||| || | Sbjct 3863 -CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGG 3805 Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535 | || || ||||| | |||||| | | || || |||||||| ||| Sbjct 3804 CTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 3758 >seq16048 Length=246288 Score = 136 bits (150), Expect = 6e-27 Identities = 390/587 (66%), Gaps = 17/587 (3%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| || || |||||||| ||||||||||| | | ||| ||||| || || || || | Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGA 50077 || ||||| || |||||||||||||||||||| || | |||| || ||||||||||| Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 204396 Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG--TCATG 50135 | || || || || ||||| || | || ||||| || ||| | | | | ||| Sbjct 204395 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCA-AAC-GTCTCAGAACCATC 204338 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| |||||||| |||||||| || || ||| ||||| || | ||| Sbjct 204337 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 204278 Query 50196 AAAGAGATAGtttttttC-ATTAC-TATCTTTAACATAAGTATCGATCAAAAGACTATAC 50253 ||| | || | ||| | || ||| | || ||| || || | |||||| ||| Sbjct 204277 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 204220 Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313 || ||||||||||| || ||||| || |||||||| ||||| || | || |||| Sbjct 204219 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGG 204160 Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373 | ||| | || | || || || | || || || || || ||| || Sbjct 204159 AGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCG 204100 Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAAT---GTTTTTCGTTGG--GTGTTAGTTTAT 50428 ||||| || || | || || | || |||| ||| |||| || | | ||| | Sbjct 204099 GCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATCGTCGGTCAAGGTCGTTGA- 204041 Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488 ||| | | | |||| || | ||| |||||||| | |||||||| ||||| || | Sbjct 204040 -CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGG 203982 Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535 | || || ||||| | |||||| | | || || |||||||| ||| Sbjct 203981 CTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 203935 >seq16271 Length=354655 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | |||| |||||||| ||| | || | || ||| ||| |||| || Sbjct 278735 TCCTCCTTGATCAACATATCGAGCGGTGTCATTGAACACCCGCAGCATCGGAGTAATGCC 278794 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| |||| ||||| || || || || || || ||||||||||||| ||| || Sbjct 278795 ATTTGATGCTCCATTTGTGCCACGAATGTAACTGCCTGTGGCACGAATATTGTGAATAGA 278854 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || || |||| || | || ||| || || ||||| || || Sbjct 278855 GACACCAATACCTCCAGCAGATTTACTTATAACAGCACATTCCTTCAATGTATCGTAAAT 278914 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 |||||| ||||| || || ||||| Sbjct 278915 GCCCTCGATGCTGTCCTCTTTCATG 278939 >seq16162 Length=245457 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | ||| || ||||| || || ||||| | | ||||| | || | Sbjct 40932 GTGCCAGCATTGAAGAGGGTCGGGGAAGCATGAGTGAACCACCTCTGAGACATGAAATGG 40873 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || | || || || || ||||| | ||| || || || || || | ||| ||| Sbjct 40872 TATGTTTTGATTGCAGACTCAATATCGTCCTTATGGATACCGACTGCAACTCTCATCAAC 40813 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 || |||||||| || || || | ||| | | | ||||||| || ||| | || | Sbjct 40812 ATATGCTGAGGCCTCTCCACAACCTTTCCACTAACCTTCAACAGATACGATCTCTCGAGG 40753 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||| ||||||||||| | || |||||| || |||||||| || Sbjct 40752 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGGTCGTAAATGAT 40706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717863983704320