Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq16048 91.5 1e-13 seq15946 91.5 1e-13 seq11586 91.5 1e-13 seq15936 86.0 6e-12 >seq16048 Length=246288 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/166 (74%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||| || || ||||| ||||| || | | ||| ||||| ||||| || ||||| Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGA 13989 || ||||| | ||| || ||||| | |||||| || || ||| || ||| ||||||| Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGA 204396 Query 13990 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGT-TCTCCAAACG 14034 |||| ||||| || ||||| || | ||||| | || |||||| Sbjct 204395 ATATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACG 204351 >seq15946 Length=172941 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/166 (74%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||| || || ||||| ||||| || | | ||| ||||| ||||| || ||||| Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGA 13989 || ||||| | ||| || ||||| | |||||| || || ||| || ||| ||||||| Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGA 58461 Query 13990 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGT-TCTCCAAACG 14034 |||| ||||| || ||||| || | ||||| | || |||||| Sbjct 58460 ATATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACG 58416 >seq11586 Length=26096 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/166 (74%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||| || || ||||| ||||| || | | ||| ||||| ||||| || ||||| Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGA 13989 || ||||| | ||| || ||||| | |||||| || || ||| || ||| ||||||| Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGA 4219 Query 13990 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGT-TCTCCAAACG 14034 |||| ||||| || ||||| || | ||||| | || |||||| Sbjct 4218 ATATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACG 4174 >seq15936 Length=155017 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/104 (79%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||||||||| || || || ||||| || |||||| |||||||| ||||| || Sbjct 23978 CAGGCAAAATCACAGTGTAGACCTTCATCCCTGGAAATAAGCTCGTTTGAGAATGTCAAA 23919 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 ||||||||||| || | || || | ||||||||| ||| |||| Sbjct 23918 CCTGGCATCAACCCCCTCTTCTTAAGCCAAAATATGGCA-CAAA 23876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479457625299200