Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq16048 91.5 1e-13
seq15946 91.5 1e-13
seq11586 91.5 1e-13
seq15936 86.0 6e-12
>seq16048
Length=246288
Score = 91.5 bits (100), Expect = 1e-13
Identities = 123/166 (74%), Gaps = 4/166 (2%)
Strand=Plus/Minus
Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930
||| ||||| || || ||||| ||||| || | | ||| ||||| ||||| || |||||
Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455
Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGA 13989
|| ||||| | ||| || ||||| | |||||| || || ||| || ||| |||||||
Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGA 204396
Query 13990 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGT-TCTCCAAACG 14034
|||| ||||| || ||||| || | ||||| | || ||||||
Sbjct 204395 ATATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACG 204351
>seq15946
Length=172941
Score = 91.5 bits (100), Expect = 1e-13
Identities = 123/166 (74%), Gaps = 4/166 (2%)
Strand=Plus/Minus
Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930
||| ||||| || || ||||| ||||| || | | ||| ||||| ||||| || |||||
Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520
Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGA 13989
|| ||||| | ||| || ||||| | |||||| || || ||| || ||| |||||||
Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGA 58461
Query 13990 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGT-TCTCCAAACG 14034
|||| ||||| || ||||| || | ||||| | || ||||||
Sbjct 58460 ATATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACG 58416
>seq11586
Length=26096
Score = 91.5 bits (100), Expect = 1e-13
Identities = 123/166 (74%), Gaps = 4/166 (2%)
Strand=Plus/Minus
Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930
||| ||||| || || ||||| ||||| || | | ||| ||||| ||||| || |||||
Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278
Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGA 13989
|| ||||| | ||| || ||||| | |||||| || || ||| || ||| |||||||
Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGA 4219
Query 13990 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGT-TCTCCAAACG 14034
|||| ||||| || ||||| || | ||||| | || ||||||
Sbjct 4218 ATATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACG 4174
>seq15936
Length=155017
Score = 86.0 bits (94), Expect = 6e-12
Identities = 82/104 (79%), Gaps = 1/104 (1%)
Strand=Plus/Minus
Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931
|| ||||||||||| || || || ||||| || |||||| |||||||| ||||| ||
Sbjct 23978 CAGGCAAAATCACAGTGTAGACCTTCATCCCTGGAAATAAGCTCGTTTGAGAATGTCAAA 23919
Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975
||||||||||| || | || || | ||||||||| ||| ||||
Sbjct 23918 CCTGGCATCAACCCCCTCTTCTTAAGCCAAAATATGGCA-CAAA 23876
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479457625299200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |