Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq16048 86.0 6e-12 seq15946 86.0 6e-12 seq11586 86.0 6e-12 seq15936 84.2 2e-11 >seq16048 Length=246288 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| ||||| || || ||||| ||||| || | | ||| ||||| ||||| || ||||| Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 || ||||| | ||| || ||||| | |||||| || || ||| || |||||||| Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 204395 Query 13779 TATTCCCTCAAC 13790 ||| ||||| || Sbjct 204394 TATCCCCTCGAC 204383 >seq15946 Length=172941 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| ||||| || || ||||| ||||| || | | ||| ||||| ||||| || ||||| Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 || ||||| | ||| || ||||| | |||||| || || ||| || |||||||| Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 58460 Query 13779 TATTCCCTCAAC 13790 ||| ||||| || Sbjct 58459 TATCCCCTCGAC 58448 >seq11586 Length=26096 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| ||||| || || ||||| ||||| || | | ||| ||||| ||||| || ||||| Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 || ||||| | ||| || ||||| | |||||| || || ||| || |||||||| Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 4218 Query 13779 TATTCCCTCAAC 13790 ||| ||||| || Sbjct 4217 TATCCCCTCGAC 4206 >seq15936 Length=155017 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||||||||| || || || ||||| || |||||| |||||||| ||||| || Sbjct 23978 CAGGCAAAATCACAGTGTAGACCTTCATCCCTGGAAATAAGCTCGTTTGAGAATGTCAAA 23919 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 ||||||||||| || | || || | ||||||||| ||| Sbjct 23918 CCTGGCATCAACCCCCTCTTCTTAAGCCAAAATATGGCA 23880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478319067352320