Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq13853 91.5 1e-13 >seq13853 Length=43806 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | |||||||| || | ||| ||||||||| | ||||||||| | | Sbjct 19104 CCACCACGGAGACGCAACACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCTGCC 19045 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| || |||| || | ||| || || ||||||||||| | || || || | || Sbjct 19044 AATGTGCGGCCGTCCTCGAGTTGCTTCCCAGCAAAAATCAACCTTTGCTGGTCCGGAGGA 18985 Query 43003 ACACCTTCTTTTTCGCTG-ATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCG 43059 | ||| || || || ||| ||| | || || || || ||| |||||| | ||| ||| Sbjct 18984 ATACCCTCCTTATC-CTGAATCTTAGTC-TTAACGTTGTCAATTGTGTC-CGAGCTCTCT 18928 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | || || || || || || | ||| || || ||||| ||||| Sbjct 18927 ACCTCGAGAGTAATCGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 18878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381160033591104