Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq16048 141 1e-28
seq15946 136 5e-27
seq11586 136 5e-27
seq16271 100 4e-16
seq16162 98.7 1e-15
>seq16048
Length=246288
Score = 141 bits (156), Expect = 1e-28
Identities = 391/587 (67%), Gaps = 17/587 (3%)
Strand=Plus/Minus
Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123
||| || || |||||||| |||||||| || | | ||| | ||| || || || || |
Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455
Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGA 42182
|| ||||| || |||||||||||||||||||| || | |||| || ||||||||||
Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 204396
Query 42183 AGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG--TCATG 42240
| || || || || |||||| || |||| || ||||| || || | | | |||
Sbjct 204395 ATATCCCCTCGACACACGCAAAAGCGATAA-TC-CTCTCAGCAAACGTCTCAGAACCATC 204338
Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300
||||| |||||||| |||||||| || || ||| ||||| || | |||
Sbjct 204337 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 204278
Query 42301 AAAGAGATAGtttttttC-ATTAC-TATCTTTAACATATGTATCGATCAAAAGACTATAC 42358
||| | || | ||| | || ||| | || ||| || || | |||||| |||
Sbjct 204277 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 204220
Query 42359 ATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTA 42418
|| || |||||||| || ||||| || |||||||| ||||| || | || ||||
Sbjct 204219 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGG 204160
Query 42419 ACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478
| ||| | || | || || || | || ||| || || || ||| ||
Sbjct 204159 AGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCG 204100
Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGT---GTTAATTTAT 42533
||||| || || | || || | || |||| ||| || |||| | | || |
Sbjct 204099 GCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATCGTCGGTCAAGGTCGTTGA- 204041
Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593
||| | | | |||| || | ||| |||||||| |||||||||| |||||||| |
Sbjct 204040 -CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGG 203982
Query 42594 CCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATA 42640
| || || ||||| | |||||| | | || ||||||||||| |||
Sbjct 203981 CTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 203935
>seq15946
Length=172941
Score = 136 bits (150), Expect = 5e-27
Identities = 390/587 (66%), Gaps = 17/587 (3%)
Strand=Plus/Minus
Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123
||| || || |||||||| |||||||| || | | ||| | ||| || || || || |
Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520
Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGA 42182
|| ||||| || |||||||||||||||||||| || | |||| || ||||||||||
Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 58461
Query 42183 AGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG--TCATG 42240
| || || || || |||||| || |||| || ||||| || || | | | |||
Sbjct 58460 ATATCCCCTCGACACACGCAAAAGCGATAA-TC-CTCTCAGCAAACGTCTCAGAACCATC 58403
Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300
||||| |||||||| |||||||| || || ||| ||||| || | |||
Sbjct 58402 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 58343
Query 42301 AAAGAGATAGtttttttC-ATTAC-TATCTTTAACATATGTATCGATCAAAAGACTATAC 42358
||| | || | ||| | || ||| | || ||| || || | |||||| |||
Sbjct 58342 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 58285
Query 42359 ATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTA 42418
|| || |||||||| || ||||| || |||||||| ||||| || | || ||||
Sbjct 58284 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGG 58225
Query 42419 ACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478
| ||| | || | || || || | || ||| || || || ||| ||
Sbjct 58224 AGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCG 58165
Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CCGGT---GTTAATTTAT 42533
||||| || || | || || | || |||| ||| | |||| | | || |
Sbjct 58164 GCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGA- 58106
Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593
||| | | | |||| || | ||| |||||||| |||||||||| |||||||| |
Sbjct 58105 -CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGG 58047
Query 42594 CCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATA 42640
| || || ||||| | |||||| | | || ||||||||||| |||
Sbjct 58046 CTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 58000
>seq11586
Length=26096
Score = 136 bits (150), Expect = 5e-27
Identities = 390/587 (66%), Gaps = 17/587 (3%)
Strand=Plus/Minus
Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123
||| || || |||||||| |||||||| || | | ||| | ||| || || || || |
Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278
Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGA 42182
|| ||||| || |||||||||||||||||||| || | |||| || ||||||||||
Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 4219
Query 42183 AGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG--TCATG 42240
| || || || || |||||| || |||| || ||||| || || | | | |||
Sbjct 4218 ATATCCCCTCGACACACGCAAAAGCGATAA-TC-CTCTCAGCAAACGTCTCAGAACCATC 4161
Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300
||||| |||||||| |||||||| || || ||| ||||| || | |||
Sbjct 4160 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 4101
Query 42301 AAAGAGATAGtttttttC-ATTAC-TATCTTTAACATATGTATCGATCAAAAGACTATAC 42358
||| | || | ||| | || ||| | || ||| || || | |||||| |||
Sbjct 4100 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 4043
Query 42359 ATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTA 42418
|| || |||||||| || ||||| || |||||||| ||||| || | || ||||
Sbjct 4042 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGG 3983
Query 42419 ACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478
| ||| | || | || || || | || ||| || || || ||| ||
Sbjct 3982 AGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCG 3923
Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CCGGT---GTTAATTTAT 42533
||||| || || | || || | || |||| ||| | |||| | | || |
Sbjct 3922 GCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGA- 3864
Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593
||| | | | |||| || | ||| |||||||| |||||||||| |||||||| |
Sbjct 3863 -CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGG 3805
Query 42594 CCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATA 42640
| || || ||||| | |||||| | | || ||||||||||| |||
Sbjct 3804 CTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 3758
>seq16271
Length=354655
Score = 100 bits (110), Expect = 4e-16
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236
|||||| ||||| | |||| |||||||| ||| | || | || ||| ||| |||| ||
Sbjct 278735 TCCTCCTTGATCAACATATCGAGCGGTGTCATTGAACACCCGCAGCATCGGAGTAATGCC 278794
Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296
||| ||||| ||||| || || || || || || |||||||||||||| ||| ||
Sbjct 278795 ATTTGATGCTCCATTTGTGCCACGAATGTAACTGCCTGTGGCACGAATATTGTGAATAGA 278854
Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356
| ||| || || || || |||| || | || ||| || || ||||| || ||
Sbjct 278855 GACACCAATACCTCCAGCAGATTTACTTATAACAGCACATTCCTTCAATGTATCGTAAAT 278914
Query 72357 GCCCTCTATACTATCATCCATCATG 72381
|||||| || || || || |||||
Sbjct 278915 GCCCTCGATGCTGTCCTCTTTCATG 278939
>seq16162
Length=245457
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477
|| || ||||| || | ||| || ||||| || || ||||| | | ||||| | || |
Sbjct 40932 GTGCCAGCATTGAAGAGGGTCGGGGAAGCATGAGTGAACCACCTCTGAGACATGAAATGG 40873
Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537
|| || | || || || || ||||| | ||| || || || || || | ||| |||
Sbjct 40872 TATGTTTTGATTGCAGACTCAATATCGTCCTTATGGATACCGACTGCAACTCTCATCAAC 40813
Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597
||||||||||| || || || | ||| | | | ||||||| || ||| | || |
Sbjct 40812 ATATGCTGAGGCCTCTCCACAACCTTTCCACTAACCTTCAACAGATACGATCTCTCGAGG 40753
Query 72598 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644
||||| ||||||||||| | || |||||| || |||||||| ||
Sbjct 40752 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGGTCGTAAATGAT 40706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670760945946880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |