Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq16048 141 1e-28 seq15946 136 5e-27 seq11586 136 5e-27 seq16271 100 4e-16 seq16162 98.7 1e-15 >seq16048 Length=246288 Score = 141 bits (156), Expect = 1e-28 Identities = 391/587 (67%), Gaps = 17/587 (3%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| || || |||||||| |||||||| || | | ||| | ||| || || || || | Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGA 42182 || ||||| || |||||||||||||||||||| || | |||| || |||||||||| Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 204396 Query 42183 AGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG--TCATG 42240 | || || || || |||||| || |||| || ||||| || || | | | ||| Sbjct 204395 ATATCCCCTCGACACACGCAAAAGCGATAA-TC-CTCTCAGCAAACGTCTCAGAACCATC 204338 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| |||||||| |||||||| || || ||| ||||| || | ||| Sbjct 204337 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 204278 Query 42301 AAAGAGATAGtttttttC-ATTAC-TATCTTTAACATATGTATCGATCAAAAGACTATAC 42358 ||| | || | ||| | || ||| | || ||| || || | |||||| ||| Sbjct 204277 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 204220 Query 42359 ATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTA 42418 || || |||||||| || ||||| || |||||||| ||||| || | || |||| Sbjct 204219 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGG 204160 Query 42419 ACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478 | ||| | || | || || || | || ||| || || || ||| || Sbjct 204159 AGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCG 204100 Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGT---GTTAATTTAT 42533 ||||| || || | || || | || |||| ||| || |||| | | || | Sbjct 204099 GCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATCGTCGGTCAAGGTCGTTGA- 204041 Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593 ||| | | | |||| || | ||| |||||||| |||||||||| |||||||| | Sbjct 204040 -CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGG 203982 Query 42594 CCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 | || || ||||| | |||||| | | || ||||||||||| ||| Sbjct 203981 CTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 203935 >seq15946 Length=172941 Score = 136 bits (150), Expect = 5e-27 Identities = 390/587 (66%), Gaps = 17/587 (3%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| || || |||||||| |||||||| || | | ||| | ||| || || || || | Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGA 42182 || ||||| || |||||||||||||||||||| || | |||| || |||||||||| Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 58461 Query 42183 AGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG--TCATG 42240 | || || || || |||||| || |||| || ||||| || || | | | ||| Sbjct 58460 ATATCCCCTCGACACACGCAAAAGCGATAA-TC-CTCTCAGCAAACGTCTCAGAACCATC 58403 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| |||||||| |||||||| || || ||| ||||| || | ||| Sbjct 58402 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 58343 Query 42301 AAAGAGATAGtttttttC-ATTAC-TATCTTTAACATATGTATCGATCAAAAGACTATAC 42358 ||| | || | ||| | || ||| | || ||| || || | |||||| ||| Sbjct 58342 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 58285 Query 42359 ATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTA 42418 || || |||||||| || ||||| || |||||||| ||||| || | || |||| Sbjct 58284 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGG 58225 Query 42419 ACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478 | ||| | || | || || || | || ||| || || || ||| || Sbjct 58224 AGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCG 58165 Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CCGGT---GTTAATTTAT 42533 ||||| || || | || || | || |||| ||| | |||| | | || | Sbjct 58164 GCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGA- 58106 Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593 ||| | | | |||| || | ||| |||||||| |||||||||| |||||||| | Sbjct 58105 -CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGG 58047 Query 42594 CCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 | || || ||||| | |||||| | | || ||||||||||| ||| Sbjct 58046 CTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 58000 >seq11586 Length=26096 Score = 136 bits (150), Expect = 5e-27 Identities = 390/587 (66%), Gaps = 17/587 (3%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| || || |||||||| |||||||| || | | ||| | ||| || || || || | Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGA 42182 || ||||| || |||||||||||||||||||| || | |||| || |||||||||| Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 4219 Query 42183 AGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG--TCATG 42240 | || || || || |||||| || |||| || ||||| || || | | | ||| Sbjct 4218 ATATCCCCTCGACACACGCAAAAGCGATAA-TC-CTCTCAGCAAACGTCTCAGAACCATC 4161 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| |||||||| |||||||| || || ||| ||||| || | ||| Sbjct 4160 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 4101 Query 42301 AAAGAGATAGtttttttC-ATTAC-TATCTTTAACATATGTATCGATCAAAAGACTATAC 42358 ||| | || | ||| | || ||| | || ||| || || | |||||| ||| Sbjct 4100 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 4043 Query 42359 ATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTA 42418 || || |||||||| || ||||| || |||||||| ||||| || | || |||| Sbjct 4042 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGG 3983 Query 42419 ACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478 | ||| | || | || || || | || ||| || || || ||| || Sbjct 3982 AGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCG 3923 Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CCGGT---GTTAATTTAT 42533 ||||| || || | || || | || |||| ||| | |||| | | || | Sbjct 3922 GCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGA- 3864 Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593 ||| | | | |||| || | ||| |||||||| |||||||||| |||||||| | Sbjct 3863 -CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGG 3805 Query 42594 CCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 | || || ||||| | |||||| | | || ||||||||||| ||| Sbjct 3804 CTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 3758 >seq16271 Length=354655 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | |||| |||||||| ||| | || | || ||| ||| |||| || Sbjct 278735 TCCTCCTTGATCAACATATCGAGCGGTGTCATTGAACACCCGCAGCATCGGAGTAATGCC 278794 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| ||||| ||||| || || || || || || |||||||||||||| ||| || Sbjct 278795 ATTTGATGCTCCATTTGTGCCACGAATGTAACTGCCTGTGGCACGAATATTGTGAATAGA 278854 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| || || || || |||| || | || ||| || || ||||| || || Sbjct 278855 GACACCAATACCTCCAGCAGATTTACTTATAACAGCACATTCCTTCAATGTATCGTAAAT 278914 Query 72357 GCCCTCTATACTATCATCCATCATG 72381 |||||| || || || || ||||| Sbjct 278915 GCCCTCGATGCTGTCCTCTTTCATG 278939 >seq16162 Length=245457 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || ||||| || | ||| || ||||| || || ||||| | | ||||| | || | Sbjct 40932 GTGCCAGCATTGAAGAGGGTCGGGGAAGCATGAGTGAACCACCTCTGAGACATGAAATGG 40873 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || || | || || || || ||||| | ||| || || || || || | ||| ||| Sbjct 40872 TATGTTTTGATTGCAGACTCAATATCGTCCTTATGGATACCGACTGCAACTCTCATCAAC 40813 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597 ||||||||||| || || || | ||| | | | ||||||| || ||| | || | Sbjct 40812 ATATGCTGAGGCCTCTCCACAACCTTTCCACTAACCTTCAACAGATACGATCTCTCGAGG 40753 Query 72598 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||| ||||||||||| | || |||||| || |||||||| || Sbjct 40752 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGGTCGTAAATGAT 40706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670760945946880