Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq13853 140 3e-28 seq15779 107 2e-18 seq4575 98.7 1e-15 seq22481 96.9 4e-15 seq15654 96.9 4e-15 seq44981 93.3 4e-14 seq44944 91.5 1e-13 seq13404 89.7 5e-13 >seq13853 Length=43806 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | ||| || |||| || || || ||||| ||||||||||| | Sbjct 18876 CCACCACGTAGACGAAGAACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCC 18817 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| || |||||||||||| |||||||||||||||| || || || Sbjct 18816 AAAGTACGGCCGTCTTCAAGCTGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGA 18757 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| ||| | | || | |||||| | | ||| ||| Sbjct 18756 ATTCCTTCCTTGTCTTGGATTTTTGTTTTGACATTGTCGATCGTGTCAGAGCTTTCGACT 18697 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||||||||| | ||||| ||||| |||||||| Sbjct 18696 TCTAGAGTGATTGTCTTGCCGGTTAGGGTTTTCACGAAGATTTGCAT 18650 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | ||| || |||| || || || ||||| ||||||||||| | Sbjct 9294 CCACCACGTAGACGAAGAACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCC 9235 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| || |||||||||||| |||||||||||||||| || || || Sbjct 9234 AAAGTACGGCCGTCTTCAAGCTGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGA 9175 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| ||| | | || | |||||| | | ||| ||| Sbjct 9174 ATTCCTTCCTTGTCTTGGATTTTTGTTTTGACATTGTCGATCGTGTCAGAGCTTTCGACT 9115 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||| |||| | ||||| ||||| |||||||| Sbjct 9114 TCTAGAGTGATTGTCTTGTCGGTTAGGGTTTTCACGAAGATTTGCAT 9068 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || ||||||||||| || | ||| | || || || ||||| ||||| || ||| | Sbjct 9748 CCACCACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCC 9689 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| | || ||||| || || || || | |||| ||| ||||| || || || Sbjct 9688 AATGTGCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGG 9629 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || ||||| || ||| || | | || | ||||| || || || Sbjct 9628 ATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCGATGGTGTCGCTGCTCTCAACC 9569 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || ||||| || ||||| || || |||||| Sbjct 9568 TCGAGAGTGATGGTCTTCCCCGTCAAGGTCTTTACAAAAATCTGCATA 9521 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || ||||||||||| || | ||| | || || || ||||| ||||| || ||| | Sbjct 19788 CCACCACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCC 19729 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| | || ||||| || || || || | |||| ||| ||||| || || || Sbjct 19728 AATGTGCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGG 19669 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || ||||| || ||| || | | || | ||||| || || || Sbjct 19668 ATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCGATGGTGTCGCTGCTCTCAACC 19609 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || ||||| || || ||||| || |||||| Sbjct 19608 TCGAGGGTGATAGTCTTCCCAGTCAAGGTCTTCACGAAAATCTGCATA 19561 >seq15779 Length=145502 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 143016 || || || ||||| | ||| || |||| || || || || || |||||||| || ||| Sbjct 121926 CCACCACGCAAACGGAGAACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCT 121867 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| |||||| || ||||| |||||| ||||||| | |||||| || || || Sbjct 121866 -AGGGTGCGACCGTCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGG 121808 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || ||| || | | || | ||||| | ||| || Sbjct 121807 GATCCCTTCCTTGTCTTGGATCTTTGTCTTGACATTGTCGATAGTGTCGGAACTTTCGAC 121748 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||||||||| || ||||| ||||| |||||||| Sbjct 121747 CTCAAGAGTGATGGTCTTGCCGGTTAAGGTTTTGACGAAGATTTGCAT 121700 >seq4575 Length=13488 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || || || || || || |||| | ||| ||||||||||||||| Sbjct 357 GTCGATTCCTTCTGAATATTATAGTCTGCCAACGTGCGCCCGTCCTCGAGTTGTTTACCA 298 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| | |||||| || || || |||||||| || || ||||| || Sbjct 297 GCAAAGATCAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATTTTGGTCTTG 238 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | || || || | || | |||||||||||||| || Sbjct 237 ACATTGTCAATCGTGTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTC 178 Query 143168 TTTACGAATATTTGCAT 143184 |||||||| |||||||| Sbjct 177 TTTACGAAGATTTGCAT 161 >seq22481 Length=674 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || || |||| || || || || || |||||||| || Sbjct 370 GCCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCAGC 311 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||| || || |||||||||||| ||||||| | |||||| || || || Sbjct 310 CAAGGTGCGGCCGTCCTCAAGCTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGG 251 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| || || ||||| || | | || | |||||| | || || Sbjct 250 GATGCCTTCCTTATCCTGGATTTTGGTCTTGACATTGTCAATCGTGTCGGAACTCTCAAC 191 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||||| || |||||||| |||||||| Sbjct 190 CTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATTTGCAT 143 >seq15654 Length=163759 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || || |||| || || || || || |||||||| || Sbjct 111786 GCCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCAGC 111727 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||| || || |||||||||||| ||||||| | |||||| || || || Sbjct 111726 CAAGGTGCGGCCGTCCTCAAGCTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGG 111667 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| || || ||||| || | | || | |||||| | || || Sbjct 111666 GATGCCTTCCTTATCCTGGATTTTGGTCTTGACATTGTCAATCGTGTCGGAACTCTCAAC 111607 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||||| || |||||||| |||||||| Sbjct 111606 CTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATTTGCAT 111559 >seq44981 Length=29031 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||| |||||||||||||||||| ||||||| | |||||| || || || |||||||| || Sbjct 10438 GTCCTCGAGTTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTT 10497 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 || ||||| || | | || | |||||| | || || || | || | Sbjct 10498 ATCCTGGATTTTGGTCTTGACATTGTCAATCGTGTCGGAACTCTCAACCTCGAGGGTGAT 10557 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||||||||| || |||||||| |||||||| Sbjct 10558 GGTCTTGCCGGTCAAAGTCTTTACGAAGATTTGCAT 10593 >seq44944 Length=25146 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| || || || || || |||||||| ||| Sbjct 21010 CCACCACGCAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 21069 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || |||||||| || |||||| |||||||||||||||| || || || Sbjct 21070 AGAGTGCGGCCATCCTCGAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGGTCTGGGGGG 21129 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || ||||| ||||| || | | || | ||||| | ||||| Sbjct 21130 ATGCCCTCCTTGTCTTGGATTTTGGTCTTGACGTTGTCGATTGTGTCAGAACTCTCTACC 21189 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||||||||||| || || ||||| || |||||| Sbjct 21190 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATA 21237 >seq13404 Length=35904 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || || || || || || |||| | || |||||||||||||| Sbjct 6086 GTCGATTCCTTCTGAATATTATAGTCTGCCAACGTGCGCCCATCCTCGAGTTGTTTACCC 6027 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| | |||||| || || || |||||||| || || ||||| || Sbjct 6026 GCAAAGATCAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATTTTGGTCTTG 5967 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | || || || | || | |||||||||||||| || Sbjct 5966 ACATTGTCAATCGTGTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTC 5907 Query 143168 TTTACGAATATTTGCAT 143184 |||||||| |||||||| Sbjct 5906 TTTACGAAGATTTGCAT 5890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506728646684160