Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq13853 140 3e-28
seq15779 107 2e-18
seq4575 98.7 1e-15
seq22481 96.9 4e-15
seq15654 96.9 4e-15
seq44981 93.3 4e-14
seq44944 91.5 1e-13
seq13404 89.7 5e-13
>seq13853
Length=43806
Score = 140 bits (154), Expect = 3e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || |||| ||| | ||| || |||| || || || ||||| ||||||||||| |
Sbjct 18876 CCACCACGTAGACGAAGAACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCC 18817
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || | |||||| || |||||||||||| |||||||||||||||| || || ||
Sbjct 18816 AAAGTACGGCCGTCTTCAAGCTGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGA 18757
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||| ||||| |||||| ||| | | || | |||||| | | ||| |||
Sbjct 18756 ATTCCTTCCTTGTCTTGGATTTTTGTTTTGACATTGTCGATCGTGTCAGAGCTTTCGACT 18697
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | ||| | ||||||||||| | ||||| ||||| ||||||||
Sbjct 18696 TCTAGAGTGATTGTCTTGCCGGTTAGGGTTTTCACGAAGATTTGCAT 18650
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || |||| ||| | ||| || |||| || || || ||||| ||||||||||| |
Sbjct 9294 CCACCACGTAGACGAAGAACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCC 9235
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || | |||||| || |||||||||||| |||||||||||||||| || || ||
Sbjct 9234 AAAGTACGGCCGTCTTCAAGCTGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGA 9175
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||| ||||| |||||| ||| | | || | |||||| | | ||| |||
Sbjct 9174 ATTCCTTCCTTGTCTTGGATTTTTGTTTTGACATTGTCGATCGTGTCAGAGCTTTCGACT 9115
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | ||| | |||||| |||| | ||||| ||||| ||||||||
Sbjct 9114 TCTAGAGTGATTGTCTTGTCGGTTAGGGTTTTCACGAAGATTTGCAT 9068
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || ||||||||||| || | ||| | || || || ||||| ||||| || ||| |
Sbjct 9748 CCACCACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCC 9689
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||||| | || ||||| || || || || | |||| ||| ||||| || || ||
Sbjct 9688 AATGTGCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGG 9629
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
||||| || ||||| || ||| || | | || | ||||| || || ||
Sbjct 9628 ATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCGATGGTGTCGCTGCTCTCAACC 9569
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | ||| | ||||| || ||||| || ||||| || || ||||||
Sbjct 9568 TCGAGAGTGATGGTCTTCCCCGTCAAGGTCTTTACAAAAATCTGCATA 9521
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || ||||||||||| || | ||| | || || || ||||| ||||| || ||| |
Sbjct 19788 CCACCACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCC 19729
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||||| | || ||||| || || || || | |||| ||| ||||| || || ||
Sbjct 19728 AATGTGCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGG 19669
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
||||| || ||||| || ||| || | | || | ||||| || || ||
Sbjct 19668 ATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCGATGGTGTCGCTGCTCTCAACC 19609
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | || | ||||| || ||||| || || ||||| || ||||||
Sbjct 19608 TCGAGGGTGATAGTCTTCCCAGTCAAGGTCTTCACGAAAATCTGCATA 19561
>seq15779
Length=145502
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 143016
|| || || ||||| | ||| || |||| || || || || || |||||||| || |||
Sbjct 121926 CCACCACGCAAACGGAGAACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCT 121867
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| |||| |||||| || ||||| |||||| ||||||| | |||||| || || ||
Sbjct 121866 -AGGGTGCGACCGTCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGG 121808
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| ||||| ||||| || ||| || | | || | ||||| | ||| ||
Sbjct 121807 GATCCCTTCCTTGTCTTGGATCTTTGTCTTGACATTGTCGATAGTGTCGGAACTTTCGAC 121748
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| ||| | ||||||||||| || ||||| ||||| ||||||||
Sbjct 121747 CTCAAGAGTGATGGTCTTGCCGGTTAAGGTTTTGACGAAGATTTGCAT 121700
>seq4575
Length=13488
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| ||||| || || || || || || || |||| | ||| |||||||||||||||
Sbjct 357 GTCGATTCCTTCTGAATATTATAGTCTGCCAACGTGCGCCCGTCCTCGAGTTGTTTACCA 298
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
||| ||||||| | |||||| || || || |||||||| || || ||||| ||
Sbjct 297 GCAAAGATCAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATTTTGGTCTTG 238
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | |||||| | || || || | || | |||||||||||||| ||
Sbjct 237 ACATTGTCAATCGTGTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTC 178
Query 143168 TTTACGAATATTTGCAT 143184
|||||||| ||||||||
Sbjct 177 TTTACGAAGATTTGCAT 161
>seq22481
Length=674
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| || || | ||| | || || |||| || || || || || |||||||| ||
Sbjct 370 GCCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCAGC 311
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
|| |||| ||| || || |||||||||||| ||||||| | |||||| || || ||
Sbjct 310 CAAGGTGCGGCCGTCCTCAAGCTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGG 251
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|||||||| || || ||||| || | | || | |||||| | || ||
Sbjct 250 GATGCCTTCCTTATCCTGGATTTTGGTCTTGACATTGTCAATCGTGTCGGAACTCTCAAC 191
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | |||||||||||||| || |||||||| ||||||||
Sbjct 190 CTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATTTGCAT 143
>seq15654
Length=163759
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| || || | ||| | || || |||| || || || || || |||||||| ||
Sbjct 111786 GCCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCAGC 111727
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
|| |||| ||| || || |||||||||||| ||||||| | |||||| || || ||
Sbjct 111726 CAAGGTGCGGCCGTCCTCAAGCTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGG 111667
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|||||||| || || ||||| || | | || | |||||| | || ||
Sbjct 111666 GATGCCTTCCTTATCCTGGATTTTGGTCTTGACATTGTCAATCGTGTCGGAACTCTCAAC 111607
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | |||||||||||||| || |||||||| ||||||||
Sbjct 111606 CTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATTTGCAT 111559
>seq44981
Length=29031
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088
||| |||||||||||||||||| ||||||| | |||||| || || || |||||||| ||
Sbjct 10438 GTCCTCGAGTTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTT 10497
Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148
|| ||||| || | | || | |||||| | || || || | || |
Sbjct 10498 ATCCTGGATTTTGGTCTTGACATTGTCAATCGTGTCGGAACTCTCAACCTCGAGGGTGAT 10557
Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||||||||||||| || |||||||| ||||||||
Sbjct 10558 GGTCTTGCCGGTCAAAGTCTTTACGAAGATTTGCAT 10593
>seq44944
Length=25146
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | ||| | || || |||| || || || || || |||||||| |||
Sbjct 21010 CCACCACGCAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 21069
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| |||| || |||||||| || |||||| |||||||||||||||| || || ||
Sbjct 21070 AGAGTGCGGCCATCCTCGAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGGTCTGGGGGG 21129
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
||||| || ||||| ||||| || | | || | ||||| | |||||
Sbjct 21130 ATGCCCTCCTTGTCTTGGATTTTGGTCTTGACGTTGTCGATTGTGTCAGAACTCTCTACC 21189
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | || | |||||||||||||| || || ||||| || ||||||
Sbjct 21190 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATA 21237
>seq13404
Length=35904
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| ||||| || || || || || || || |||| | || ||||||||||||||
Sbjct 6086 GTCGATTCCTTCTGAATATTATAGTCTGCCAACGTGCGCCCATCCTCGAGTTGTTTACCC 6027
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
||| ||||||| | |||||| || || || |||||||| || || ||||| ||
Sbjct 6026 GCAAAGATCAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATTTTGGTCTTG 5967
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | |||||| | || || || | || | |||||||||||||| ||
Sbjct 5966 ACATTGTCAATCGTGTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTC 5907
Query 143168 TTTACGAATATTTGCAT 143184
|||||||| ||||||||
Sbjct 5906 TTTACGAAGATTTGCAT 5890
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506728646684160
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