Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq13853 100 2e-16 seq16149 96.9 3e-15 seq15654 95.1 9e-15 seq44944 93.3 3e-14 seq14292 93.3 3e-14 seq37662 91.5 1e-13 seq16084 91.5 1e-13 seq13717 91.5 1e-13 seq15779 86.0 5e-12 seq14479 82.4 6e-11 >seq13853 Length=43806 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||| || || ||||| ||||||||||| | | | | ||||||| Sbjct 18859 AACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCGTCTTC 18800 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| ||||| | |||| |||||| ||||| ||||||||||| ||||| Sbjct 18799 AAGCTGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTG 18740 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| | || ||| | || || || || |||| || |||| || || || || Sbjct 18739 GATTTTTGTTTTGACATTGTCGATCGTGTCAGAGCTTTCGACTTCTAGAGTGATTGTCTT 18680 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || |||||||| Sbjct 18679 GCCGGTTAGGGTTTTCACGAAGATTTGCAT 18650 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || || || || ||||| ||| ||| | | ||||||| | || Sbjct 9952 TGGAGGGTCGACTCCTTCTGAATATTGTAGTCGGCCAGAGTACGGCCGTCTTCCATCTGC 9893 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || || ||||||| | ||||||||| |||||| || || ||||| || ||| Sbjct 9892 TTCCCTGCAAATATCAACCTTTGTTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTG 9833 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||| ||| | || || || || || | || || || | ||| ||||| || |||||| Sbjct 9832 GTCTTCACATTGTCGATCGTGTCACTGCTCTCCACCTCCAGGGTGATGGTCTTTCCTGTC 9773 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | || || || |||||||||||| Sbjct 9772 AACGTCTTCACGAAAATTTGCATA 9749 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||| || || ||||| ||||||||||| | | | | ||||||| Sbjct 9277 AACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCGTCTTC 9218 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| ||||| | |||| |||||| ||||| ||||||||||| ||||| Sbjct 9217 AAGCTGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTG 9158 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| | || ||| | || || || || |||| || |||| || || || || Sbjct 9157 GATTTTTGTTTTGACATTGTCGATCGTGTCAGAGCTTTCGACTTCTAGAGTGATTGTCTT 9098 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || ||||| || || |||||||| Sbjct 9097 GTCGGTTAGGGTTTTCACGAAGATTTGCAT 9068 >seq16149 Length=224952 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || || || |||||||| ||| || | | ||||||| | ||| Sbjct 103665 TGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGTGTACGGCCGTCTTCAAGCTGT 103606 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | || | ||||||||||||| || || ||||| ||||| ||||||| Sbjct 103605 TTTCCGGCGAAGATGAGACGTTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGAATTTTG 103546 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||| ||| | || ||||| ||| ||| || || || || || || || || || Sbjct 103545 GTCTTCACATTGTCGATGGTGTCGGAGGATTCAACCTCCAATGTTATCGTCTTCCCCGTT 103486 Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366 || ||||| || || || ||||| || Sbjct 103485 AGGGTTTTCACGAATATCTGCATCTT 103460 >seq15654 Length=163759 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || |||||||| || | | | | | || || Sbjct 112223 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAAAGTACGACCATCCTCG 112164 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||| ||||| | |||| | || ||||| ||| || || || || || | Sbjct 112163 AGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGTGGGATGCCCTCCTTATCTTGA 112104 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || |||||||| | || ||||||||||| | || || || | ||| ||||| || Sbjct 112103 ATCTTAGTCTTTACATTATCGATGGTATCGCTGCTCTCGACCTCGAGGGTGATGGTCTTT 112044 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||| ||||| ||||| |||||| Sbjct 112043 CCCGTCAAAGTCTTTACGAAAATCTGCATA 112014 >seq44944 Length=25146 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || |||||||| || ||| | | |||| || Sbjct 21256 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTGCGGCCGTCCTCG 21315 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || |||||| | |||| |||||| ||||| || || ||||| ||||| Sbjct 21316 AGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGGATCCCTTCCTTGTCCTGG 21375 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| | || ||| | || || || ||| | | || || || | || || || || Sbjct 21376 ATTTTGGTTTTGACATTGTCGATTGTGTCGGAACTCTCGACCTCGAGAGTGATTGTCTTG 21435 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || || || || |||||||| Sbjct 21436 CCTGTGAGGGTCTTAACGAAGATTTGCAT 21464 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || |||||||| ||| ||| | | | || || Sbjct 21028 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCCTCG 21087 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || ||||| | |||| |||||| ||||| || || || || ||||| Sbjct 21088 AGTTGCTTTCCAGCAAAGATCAGACGTTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 21147 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| |||| || | || || || || | | ||||| || | ||| ||||| || Sbjct 21148 ATTTTGGTCTTGACGTTGTCGATTGTGTCAGAACTCTCTACCTCGAGGGTGATGGTCTTG 21207 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || || || || |||||| Sbjct 21208 CCGGTCAAGGTCTTGACGAAGATCTGCATA 21237 >seq14292 Length=64350 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || |||||||| || ||| | | |||| || Sbjct 61 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTGCGGCCGTCCTCG 120 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || |||||| | |||| |||||| ||||| || || ||||| ||||| Sbjct 121 AGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGGATCCCTTCCTTGTCCTGG 180 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| | || ||| | || || || ||| | | || || || | || || || || Sbjct 181 ATTTTGGTTTTGACATTGTCGATTGTGTCGGAACTCTCGACCTCGAGAGTGATTGTCTTG 240 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || || || || |||||||| Sbjct 241 CCTGTGAGGGTCTTAACGAAGATTTGCAT 269 >seq37662 Length=1545 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| || || || || || || || || ||||| || ||||||||||| Sbjct 28 CCACCTCTCAGTCGCAACACCAAGTGGAGCGTAGACTCTTTCTGGATGTTGTAATCAGCA 87 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | |||| || | ||||| || ||| | ||||| | || || || || Sbjct 88 AGCGTACGACCGTCCTCAAGCTGTTTTCCCGCGAAAATCAACCTCTGCTGATCAGGAGGG 147 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || || || || ||| ||| || | || ||||| || | |||| || Sbjct 148 ATCCCCTCCTTATCTTGAACCTTGGACTTAACGTTGTCAATGGTGTCCGAACTTTCAACT 207 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || || |||||||| ||||| ||||| ||||||||| Sbjct 208 TCCAAGGTGATCGTCTTCCCTGTCAGCGTTTTCACAAAGATTTGCATA 255 >seq16084 Length=201933 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||| || || || ||||| |||||||| ||| ||| ||| | ||| Sbjct 369 AACACCAAGTGAAGCGTTGATTCCTTTTGAATGTTGTAGTCGGCTAGTGTTCGTCCATCT 310 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||| || || | || | ||||||||||| |||||| || || || || Sbjct 309 TCGAGCTGTTTTCCCGCAAAAATTAGCCGTTGTTGGTCTGGTGGAATCCCCTCCTTATCC 250 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || || |||||| | || || || || || ||||| |||| ||| || || Sbjct 249 TGGATCTTAGACTTTACGTTGTCGATCGTGTCAGAGTTCTCTACCTCTAGGGTGATCGTC 190 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||| || ||||| ||||||||| Sbjct 189 TTTCCCGTCAAAGTCTTGACAAAGATTTGCATA 157 >seq13717 Length=68558 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| || || || || || |||||||| || || | | ||||||| Sbjct 35026 ACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGTGTACGGCCGTCTTCA 35085 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||| || ||| | || | |||||||||||| |||||| ||||| ||||| Sbjct 35086 AGCTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGG 35145 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| | || ||| | || ||||| || ||| || |||| ||| || || || Sbjct 35146 ATCTTGGTTTTCACATTGTCGATGGTGTCTGAGGATTCAACCTCTAGGGTTATCGTCTTC 35205 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 ||||| || ||||| || || || ||||| ||| Sbjct 35206 CCTGTTAGGGTTTTCACGAAGATCTGCATTTTT 35238 >seq15779 Length=145502 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||| | | ||| || ||||| || || || || || |||||||| || | Sbjct 121926 CCACCACGCAAACGGAGAACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCT 121867 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | ||||||| | ||||||||||| | |||| | ||| ||||| || Sbjct 121866 AGGGTGCGACCGTCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGG 121807 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || || |||| ||| | || || || ||| | |||| || Sbjct 121806 ATCCCTTCCTTGTCTTGGATCTTTGTCTTGACATTGTCGATAGTGTCGGAACTTTCGACC 121747 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || || | ||||| || || |||||||| Sbjct 121746 TCAAGAGTGATGGTCTTGCCGGTTAAGGTTTTGACGAAGATTTGCAT 121700 >seq14479 Length=56811 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || |||||||| ||| ||| | | | || || Sbjct 51160 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCCTCG 51219 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || ||||| | |||| |||||| ||||| || || || || ||||| Sbjct 51220 AGTTGCTTTCCAGCAAAGATCAGACGTTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 51279 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| |||| || | || || || || | | || || || | ||| ||||| || Sbjct 51280 ATTTTGGTCTTGACGTTGTCGATTGTGTCAGAACTCTCGACCTCGAGGGTGATGGTCTTG 51339 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || || || || |||||| Sbjct 51340 CCGGTCAAGGTCTTGACGAAGATCTGCATA 51369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361980178907808