Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq44327 113 4e-20 seq15654 113 4e-20 seq13853 107 2e-18 seq15394 89.7 4e-13 >seq44327 Length=9034 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| |||||| |||||||||||||| |||||||| ||||||| || ||||| Sbjct 7810 AACACCAAGTGCAAAGTAGACTCCTTTTGGATATTGTAGTCCGCCAACGTACGACCGTCC 7751 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || |||||||| || ||| | || ||||||||||| || || | |||||| ||||| Sbjct 7750 TCGAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC 7691 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 || ||| || || | | ||| || |||| || || | ||| ||||| Sbjct 7690 TGGATCTTCGTCTTCACATTGTCGATCGTGTCGCTGCTTTCAACCTCAAGGGTGATGGTC 7631 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || ||||| || || ||||| ||||| Sbjct 7630 TTCCCAGTCAAAGTCTTTACGAAAATCTGCAT 7599 >seq15654 Length=163759 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| |||||| |||||||||||||| |||||||| ||||||| || ||||| Sbjct 112454 AACACCAAGTGCAAAGTAGACTCCTTTTGGATATTGTAGTCCGCCAACGTACGACCGTCC 112395 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || |||||||| || ||| | || ||||||||||| || || | |||||| ||||| Sbjct 112394 TCGAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC 112335 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 || ||| || || | | ||| || |||| || || | ||| ||||| Sbjct 112334 TGGATCTTCGTCTTCACATTGTCGATCGTGTCGCTGCTTTCAACCTCAAGGGTGATGGTC 112275 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || ||||| || || ||||| ||||| Sbjct 112274 TTCCCAGTCAAAGTCTTTACGAAAATCTGCAT 112243 >seq13853 Length=43806 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| |||||| |||||||||||||||||||||||||| |||| ||| | ||||| Sbjct 19089 AACACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCTGCCAATGTGCGGCCGTCC 19030 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || || || || || ||| |||| | || ||||| ||| || | ||||| || || Sbjct 19029 TCGAGTTGCTTCCCAGCAAAAATCAACCTTTGCTGGTCCGGAGGAATACCCTCCTTATCC 18970 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGT 19008 ||| || || || | | | | || || | || ||| |||| ||||| || Sbjct 18969 TGAATCTTAGTCTTAACGTTGTCAATTGTGTC-CGAGCTCTCTACCTCGAGAGTAATCGT 18911 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || ||||| ||||| ||||| ||||| Sbjct 18910 CTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 18878 >seq15394 Length=94532 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| || | | ||| |||| ||| | ||| || ||||| || || ||||| |||||| Sbjct 44394 CCTCCACGGAGTCGTAAAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCCGCC 44335 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 |||||| | | || || |||||||| || || | || || || || |||||| | || Sbjct 44334 ATTGTTCGGCCATCTTCGAGCTGTTTTCCAGCGAAGATTAGCCTTTGTTGATCCGCTGGA 44275 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-T 18993 | ||||| || || ||| ||| ||| | | | ||| || || | | | | || Sbjct 44274 ATCCCCTCCTTCTCTTGAATCTTCGATTTCAAATTGTCGATTGTGTC-CGATGATTCGAC 44216 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||| || ||||| || |||| ||||| || || || ||||| Sbjct 44215 TTCTAGGGTTATTGTTTTCCCAGTTAGGGTTTTCACGAAGATCTGCAT 44168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414344988100672