Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq13853 104 1e-17 seq44327 86.0 4e-12 seq15654 86.0 4e-12 >seq13853 Length=43806 Score = 104 bits (114), Expect = 1e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| ||||| || ||||| ||||| ||||||||||| | ||| || | | Sbjct 19092 CGCAACACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCTGCCAATGTGCGGCCG 19033 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | |||||| ||| ||| || || | ||||||||||| || || || || || Sbjct 19032 TCCTCGAGTTGCTTCCCAGCAAAAATCAACCTTTGCTGGTCCGGAGGAATACCCTCCTTA 18973 Query 33275 TCGCTAATCGCCTGTTTTACTGTT-TGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 || |||| || ||| ||| | ||| ||||| | | || || ||||| || Sbjct 18972 TCCTGAATC-TTAGTCTTAACGTTGTCAATTGTGTCCGAGCTCTCTACCTCGAGAGTAAT 18914 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || || || | ||| || |||||||| ||||| Sbjct 18913 CGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 18878 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | |||||||| ||||| || |||||||||| |||| | | ||| || Sbjct 18858 ACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCGTCTTCA 18799 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | || || ||| ||| || | |||||||||||||| ||| || ||||| || || Sbjct 18798 AGCTGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGG 18739 Query 33281 ATCGCCTGTTTT-ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 || |||||| || | | |||||||| | || || || ||||| || || || Sbjct 18738 AT-TTTTGTTTTGACATTGTCGATCGTGTCAGAGCTTTCGACTTCTAGAGTGATTGTCTT 18680 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || ||||| ||||| |||||||| Sbjct 18679 GCCGGTTAGGGTTTTCACGAAGATTTGCAT 18650 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | |||||||| ||||| || |||||||||| |||| | | ||| || Sbjct 9276 ACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCGTCTTCA 9217 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | || || ||| ||| || | |||||||||||||| ||| || ||||| || || Sbjct 9216 AGCTGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGG 9157 Query 33281 ATCGCCTGTTTT-ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 || |||||| || | | |||||||| | || || || ||||| || || || Sbjct 9156 AT-TTTTGTTTTGACATTGTCGATCGTGTCAGAGCTTTCGACTTCTAGAGTGATTGTCTT 9098 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || || ||||| ||||| |||||||| Sbjct 9097 GTCGGTTAGGGTTTTCACGAAGATTTGCAT 9068 >seq44327 Length=9034 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| ||||| || ||||| ||||| |||||||| || | ||| | | | Sbjct 7813 CGCAACACCAAGTGCAAAGTAGACTCCTTTTGGATATTGTAGTCCGCCAACGTACGACCG 7754 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | || || ||| ||| || | | |||||||| | || ||||| || || Sbjct 7753 TCCTCGAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATGCCCTCCTTG 7694 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| | || || | | ||||||||| || || ||| || || || || Sbjct 7693 TCCTGGATCTTCGTCTTCACATTGTCGATCGTGTCGCTGCTTTCAACCTCAAGGGTGATG 7634 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || | ||| ||||||||||| ||||| Sbjct 7633 GTCTTCCCAGTCAAAGTCTTTACGAAAATCTGCAT 7599 >seq15654 Length=163759 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| ||||| || ||||| ||||| |||||||| || | ||| | | | Sbjct 112457 CGCAACACCAAGTGCAAAGTAGACTCCTTTTGGATATTGTAGTCCGCCAACGTACGACCG 112398 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | || || ||| ||| || | | |||||||| | || ||||| || || Sbjct 112397 TCCTCGAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATGCCCTCCTTG 112338 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| | || || | | ||||||||| || || ||| || || || || Sbjct 112337 TCCTGGATCTTCGTCTTCACATTGTCGATCGTGTCGCTGCTTTCAACCTCAAGGGTGATG 112278 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || | ||| ||||||||||| ||||| Sbjct 112277 GTCTTCCCAGTCAAAGTCTTTACGAAAATCTGCAT 112243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318602428521024