Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq13853 93.3 3e-14 seq15816 82.4 5e-11 seq13404 82.4 5e-11 >seq13853 Length=43806 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 |||||||| || | || ||| ||||||||||| ||||| ||| || | || Sbjct 19089 AACACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCTGCCAATGTGCGGCCGTCC 19030 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT-C 44028 || | ||| || || ||||| ||||||| |||||||||| |||| | ||| || |||| | Sbjct 19029 TCGAGTTGCTTCCCAGCAAAAATCAACCTTTGCTGGTCCGGAGGAATACCCTCCTTATCC 18970 Query 44029 TGAAATTTTTTGT-TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTG 44087 |||| | || || || || | ||| || || | ||| || |||| ||||| | Sbjct 18969 TGAA--TCTTAGTCTTAACGTTGTCAATTGTGTCCGAGCTCTCTACCTCGAGAGTAATCG 18912 Query 44088 TTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||| || |||||||| || || || ||||| Sbjct 18911 TCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 18878 >seq15816 Length=132008 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || || ||||||||||| || || ||| | || || | |||||| || ||||| Sbjct 112605 TCCTTCTGAATATTATAGTCTGCCAACGTGCGCCCGTCCTCGAGTTGTTTACCCGCAAAG 112664 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT-CTGAAATTTTTTGT-TTGACCA 44048 |||| || ||||||||| | || | ||||| |||| ||| | |||| || ||||| Sbjct 112665 ATCAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGA--TTTTGGTCTTGACAT 112722 Query 44049 TAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCA 44108 | ||| ||| || | ||| || |||| || || || || ||||| |||||||| | Sbjct 112723 TGTCAATAGTGTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTTA 112782 Query 44109 CAAATATTTGCAT 44121 | || |||||||| Sbjct 112783 CGAAGATTTGCAT 112795 >seq13404 Length=35904 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || || ||||||||||| || || ||| |||| || | |||||| || ||||| Sbjct 6080 TCCTTCTGAATATTATAGTCTGCCAACGTGCGCCCATCCTCGAGTTGTTTACCCGCAAAG 6021 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT-CTGAAATTTTTTGT-TTGACCA 44048 |||| || ||||||||| | || | ||||| |||| ||| | |||| || ||||| Sbjct 6020 ATCAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGA--TTTTGGTCTTGACAT 5963 Query 44049 TAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCA 44108 | ||| || || | ||| || |||| || || || || ||||| |||||||| | Sbjct 5962 TGTCAATCGTGTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTTA 5903 Query 44109 CAAATATTTGCAT 44121 | || |||||||| Sbjct 5902 CGAAGATTTGCAT 5890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354582646161024