Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq13853 104 2e-17 >seq13853 Length=43806 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || || | ||||| | ||| || || ||||||||||||||| || || || Sbjct 9749 ACCACCACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGC 9690 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| ||| | ||||| |||||||| || || |||| ||||||||||| ||| || Sbjct 9689 CAATGTGCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGG 9630 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | ||||||||| || || ||||| | | || ||||| ||| | ||| Sbjct 9629 GATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCG--ATGGTGTCGCTGCTCTCA 9572 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || || || | || || |||||||||||||| Sbjct 9571 ACCTCGAGAGTGATGGTCTTCCCCGTCAAGGTCTTTACAAAAATCTGCAT 9522 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || || | ||||| | ||| || || ||||||||||||||| || || || Sbjct 19789 ACCACCACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGC 19730 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| ||| | ||||| |||||||| || || |||| ||||||||||| ||| || Sbjct 19729 CAATGTGCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGG 19670 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | ||||||||| || || ||||| | | || ||||| ||| | ||| Sbjct 19669 GATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCG--ATGGTGTCGCTGCTCTCA 19612 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || || || | || ||||| ||||||||||| Sbjct 19611 ACCTCGAGGGTGATAGTCTTCCCAGTCAAGGTCTTCACGAAAATCTGCAT 19562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421019718253088