Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq15224 251 2e-62 >seq15224 Length=172684 Score = 251 bits (278), Expect = 2e-62 Identities = 296/398 (74%), Gaps = 2/398 (1%) Strand=Plus/Plus Query 19677 GCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCA 19735 |||||| |||| || | |||| ||| ||| || ||||| | | || ||| |||| || Sbjct 89319 GCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGT-TTTCTTGATCTATCCAATTGGTCA 89377 Query 19736 AGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGT 19795 ||| || ||| ||||||||||||| | || || ||||||||||| ||||| ||| | || Sbjct 89378 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 89437 Query 19796 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGT 19855 |||||| || || ||||| ||||||||||| || || |||||| | ||||| ||||| || Sbjct 89438 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 89497 Query 19856 ATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAA 19915 |||||| || || || || ||||||||| || ||||| ||||| | || | Sbjct 89498 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 89557 Query 19916 GGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGAC 19975 |||||| || || ||| ||| || | || || | || || ||||| ||||| || Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617 Query 19976 ATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTT 20035 |||||||| || ||||| || | || ||||| ||||||| || ||||||||| ||| Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677 Query 20036 CAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTT 20073 ||| ||||| ||||||||||| ||||| | ||| ||| Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTT 89715 Score = 120 bits (132), Expect = 9e-23 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 19407 CCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAAC 19466 ||||| || |||| ||||| || ||||| || ||||| || || || | ||||||||| Sbjct 89144 CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAAC 89203 Query 19467 AATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCG 19526 |||||||||||||| || | |||| | || || ||||| |||| |||||||| Sbjct 89204 AATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCA 89263 Query 19527 ATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATAT 19577 || |||||||| | || | |||||||||||||| || || ||||| ||| Sbjct 89264 ATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTAT 89314 Score = 114 bits (126), Expect = 4e-21 Identities = 129/173 (75%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 19956 TTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTG 20015 || || ||||| ||||| || |||||||| || ||||| || || || ||||| ||||| Sbjct 89743 TTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGTCGATTG 89802 Query 20016 ATATT------TCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCT 20069 || || |||||||||| |||||| ||||||||||||||||| ||||| | ||| Sbjct 89803 ATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCT 89862 Query 20070 ACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGC 20122 ||| || || || || || ||| |||| | | || || |||||||||| Sbjct 89863 GCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGC 89915 Score = 105 bits (116), Expect = 2e-18 Identities = 145/205 (71%), Gaps = 11/205 (5%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGA------ 19343 || ||| | ||| | || || || || ||||||||||| | || ||||||||| Sbjct 88921 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATCGGATGGTTTGGAGATGGT 88980 Query 19344 -----GTACTTATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTA 19398 || | ||||||||| ||| | |||| ||| || ||||| | ||||| | Sbjct 88981 TTGGTGTTTTGATGATTCCTACATTATTGACTGCAACTTCTGTATTTATTATAGCCTTCA 89040 Query 19399 TCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGT 19458 | || || ||||| || |||| ||||| || ||||| || ||||| || || || | | Sbjct 89041 TTGCTGCTCCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTT 89100 Query 19459 ACGGAAACAATATTATTTCTGGAGC 19483 |||||||||||||||||||||| || Sbjct 89101 ACGGAAACAATATTATTTCTGGTGC 89125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144364263078528