Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_006882.2
Length=45176
Score E
Sequences producing significant alignments: (Bits) Value
seq15224 251 2e-62
>seq15224
Length=172684
Score = 251 bits (278), Expect = 2e-62
Identities = 296/398 (74%), Gaps = 2/398 (1%)
Strand=Plus/Plus
Query 19677 GCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCA 19735
|||||| |||| || | |||| ||| ||| || ||||| | | || ||| |||| ||
Sbjct 89319 GCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGT-TTTCTTGATCTATCCAATTGGTCA 89377
Query 19736 AGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGT 19795
||| || ||| ||||||||||||| | || || ||||||||||| ||||| ||| | ||
Sbjct 89378 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 89437
Query 19796 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGT 19855
|||||| || || ||||| ||||||||||| || || |||||| | ||||| ||||| ||
Sbjct 89438 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 89497
Query 19856 ATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAA 19915
|||||| || || || || ||||||||| || ||||| ||||| | || |
Sbjct 89498 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 89557
Query 19916 GGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGAC 19975
|||||| || || ||| ||| || | || || | || || ||||| ||||| ||
Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617
Query 19976 ATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTT 20035
|||||||| || ||||| || | || ||||| ||||||| || ||||||||| |||
Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677
Query 20036 CAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTT 20073
||| ||||| ||||||||||| ||||| | ||| |||
Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTT 89715
Score = 120 bits (132), Expect = 9e-23
Identities = 129/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 19407 CCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAAC 19466
||||| || |||| ||||| || ||||| || ||||| || || || | |||||||||
Sbjct 89144 CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAAC 89203
Query 19467 AATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCG 19526
|||||||||||||| || | |||| | || || ||||| |||| ||||||||
Sbjct 89204 AATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCA 89263
Query 19527 ATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATAT 19577
|| |||||||| | || | |||||||||||||| || || ||||| |||
Sbjct 89264 ATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTAT 89314
Score = 114 bits (126), Expect = 4e-21
Identities = 129/173 (75%), Gaps = 6/173 (3%)
Strand=Plus/Plus
Query 19956 TTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTG 20015
|| || ||||| ||||| || |||||||| || ||||| || || || ||||| |||||
Sbjct 89743 TTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGTCGATTG 89802
Query 20016 ATATT------TCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCT 20069
|| || |||||||||| |||||| ||||||||||||||||| ||||| | |||
Sbjct 89803 ATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCT 89862
Query 20070 ACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGC 20122
||| || || || || || ||| |||| | | || || ||||||||||
Sbjct 89863 GCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGC 89915
Score = 105 bits (116), Expect = 2e-18
Identities = 145/205 (71%), Gaps = 11/205 (5%)
Strand=Plus/Plus
Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGA------ 19343
|| ||| | ||| | || || || || ||||||||||| | || |||||||||
Sbjct 88921 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATCGGATGGTTTGGAGATGGT 88980
Query 19344 -----GTACTTATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTA 19398
|| | ||||||||| ||| | |||| ||| || ||||| | ||||| |
Sbjct 88981 TTGGTGTTTTGATGATTCCTACATTATTGACTGCAACTTCTGTATTTATTATAGCCTTCA 89040
Query 19399 TCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGT 19458
| || || ||||| || |||| ||||| || ||||| || ||||| || || || | |
Sbjct 89041 TTGCTGCTCCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTT 89100
Query 19459 ACGGAAACAATATTATTTCTGGAGC 19483
|||||||||||||||||||||| ||
Sbjct 89101 ACGGAAACAATATTATTTCTGGTGC 89125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 144364263078528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |