Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq15224 203 5e-47
>seq15224
Length=172684
Score = 203 bits (224), Expect = 5e-47
Identities = 288/405 (71%), Gaps = 0/405 (0%)
Strand=Plus/Plus
Query 211956 TGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCA 212015
||| |||||||| || || |||| ||| || || ||| | | || ||| | |||||
Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCA 89377
Query 212016 GGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGT 212075
|| || || || |||||||||||||| || || || || |||||||||||| | ||
Sbjct 89378 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 89437
Query 212076 ATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTAT 212135
|||||| || || || |||||||||||||||||||| || ||| ||||| || ||| |
Sbjct 89438 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 89497
Query 212136 GTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCG 212195
||||| || | |||| ||||||||| ||||| | || || ||| | || |
Sbjct 89498 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 89557
Query 212196 TGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGAC 212255
|||||||| | || || || | ||||||| || || ||||| ||||| ||
Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617
Query 212256 ATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATT 212315
||||| ||||| ||||| |||| || || ||| || | |||||||| ||||| ||
Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677
Query 212316 CAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGT 212360
|||||| | | ||||||||||||| | || | ||||| ||
Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722
Score = 104 bits (114), Expect = 4e-17
Identities = 119/160 (74%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 211697 ATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAACATCATCT 211756
|||| || || || |||||||| || | || || | | || || ||||| || || |
Sbjct 89154 ATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAACAATATTATTT 89213
Query 211757 CTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATCTGGGAAG 211816
||||||| || |||| |||| || || || || || || ||||| || |||||||
Sbjct 89214 CTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCAATATGGGAAG 89273
Query 211817 CAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTA 211856
||||| || ||||||||||| | || ||||||||||||||
Sbjct 89274 CAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTA 89313
Score = 86.0 bits (94), Expect = 1e-11
Identities = 128/182 (70%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTC 212286
||||||| || || ||||| ||||| || ||||| ||||| ||||| ||||| || ||
Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793
Query 212287 GGTAGACTTATCTTCCAGTATGCATCA------TTCAACAACAGCAGAAGTTTACACTTC 212340
||| || | |||||||| ||| || |||||||| | ||||||||||
Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853
Query 212341 TTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATG 212400
||| | || | ||||| || || || | ||||| || || | ||||| |||| |||
Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913
Query 212401 GC 212402
||
Sbjct 89914 GC 89915
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 807100061889280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |