Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq15224 203 5e-47 >seq15224 Length=172684 Score = 203 bits (224), Expect = 5e-47 Identities = 288/405 (71%), Gaps = 0/405 (0%) Strand=Plus/Plus Query 211956 TGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCA 212015 ||| |||||||| || || |||| ||| || || ||| | | || ||| | ||||| Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCA 89377 Query 212016 GGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGT 212075 || || || || |||||||||||||| || || || || |||||||||||| | || Sbjct 89378 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 89437 Query 212076 ATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTAT 212135 |||||| || || || |||||||||||||||||||| || ||| ||||| || ||| | Sbjct 89438 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 89497 Query 212136 GTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCG 212195 ||||| || | |||| ||||||||| ||||| | || || ||| | || | Sbjct 89498 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 89557 Query 212196 TGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGAC 212255 |||||||| | || || || | ||||||| || || ||||| ||||| || Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617 Query 212256 ATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATT 212315 ||||| ||||| ||||| |||| || || ||| || | |||||||| ||||| || Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677 Query 212316 CAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGT 212360 |||||| | | ||||||||||||| | || | ||||| || Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722 Score = 104 bits (114), Expect = 4e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 211697 ATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAACATCATCT 211756 |||| || || || |||||||| || | || || | | || || ||||| || || | Sbjct 89154 ATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAACAATATTATTT 89213 Query 211757 CTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATCTGGGAAG 211816 ||||||| || |||| |||| || || || || || || ||||| || ||||||| Sbjct 89214 CTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCAATATGGGAAG 89273 Query 211817 CAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTA 211856 ||||| || ||||||||||| | || |||||||||||||| Sbjct 89274 CAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTA 89313 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTC 212286 ||||||| || || ||||| ||||| || ||||| ||||| ||||| ||||| || || Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793 Query 212287 GGTAGACTTATCTTCCAGTATGCATCA------TTCAACAACAGCAGAAGTTTACACTTC 212340 ||| || | |||||||| ||| || |||||||| | |||||||||| Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853 Query 212341 TTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATG 212400 ||| | || | ||||| || || || | ||||| || || | ||||| |||| ||| Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913 Query 212401 GC 212402 || Sbjct 89914 GC 89915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807100061889280