Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq11475 383 2e-101 seq15224 226 3e-54 seq8938 138 1e-27 seq14024 125 8e-24 seq12877 111 2e-19 >seq11475 Length=22225 Score = 383 bits (424), Expect = 2e-101 Identities = 718/1053 (68%), Gaps = 29/1053 (3%) Strand=Plus/Minus Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843 ||| ||| | ||||| || | ||||| |||||| ||||| |||||||| || | | Sbjct 12894 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAG 12835 Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 171903 | ||||||||||| || || || ||||||||||| | || | || |||||||| || Sbjct 12834 GTTGGTCTGGTCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACAG 12775 Query 171904 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 171963 | || || || || || |||||||| || ||||| | || |||||| | || || Sbjct 12774 GTACGACGTTTGTAACTTCATGGTATACTCATGGGTTGGCCAGTTCATATTTGGAAGGCT 12715 Query 171964 CAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 172023 || || ||||| ||||| || || || |||| | || | | | || | | |||| Sbjct 12714 GCAATTTCTTAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGT 12655 Query 172024 TCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 172083 | || ||||| ||||| |||||||| ||| || || |||| ||||||||| || || | Sbjct 12654 TGCTGTGGGGTCCTGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGT 12595 Query 172084 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 172143 ||| ||||| || | ||||| | || ||||| |||||||| ||| | | || || | Sbjct 12594 GGACTTTTGTTGCTCTTCATGGTGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCG 12535 Query 172144 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTG 172203 | |||| || |||| | || ||||| || ||| |||||||||| | |||| Sbjct 12534 AACTTGCTCGATCTGTTCAATTGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTG 12475 Query 172204 CAGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCAC 172263 | || || | || ||||| |||||| ||||||| | |||||||||| || | Sbjct 12474 CTGTTTTTGTTTCTGTATTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGC 12415 Query 172264 CTTCATTTGGTGTCGCAGCAATCTTTCGTTATAT----TTTATTCATACAGGGTTTCCAC 172319 || |||||||| ||||| || ||||| | || ||| |||| ||||||| || Sbjct 12414 CTAGTTTTGGTGTAGCAGCTATTTTTCGATTCATCCTCTTTTTTCA---AGGGTTT-CAT 12359 Query 172320 AATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTA 172379 ||| || || || || |||||||||||||| || || ||| || | || | || | Sbjct 12358 AATTGGACGCTGAACCCTTTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCTCTG 12299 Query 172380 CTATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATAC 172439 ||||| || || |||||||| || ||| | || || || | || || Sbjct 12298 CTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAGGA------------- 12252 Query 172440 ACTGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAA 172499 || | | | ||| |||| ||| | || || | || || || | |||||| Sbjct 12251 --TG--GTGATGGGGCAA-ATACA---TTCCGGGCTTTTAACCCAACTCAAGCTGAAGAA 12200 Query 172500 ACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCA 172559 |||||| ||| | || |||||| | || ||||| || || ||||| | || ||||| Sbjct 12199 ACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCC 12140 Query 172560 AACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCA 172619 || ||| | | ||||| ||| ||||||| || ||||| || | ||| | |||| Sbjct 12139 AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGT 12080 Query 172620 TCTATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAG 172679 || | || | || ||||| || | ||||| | || || ||||| || || ||||| Sbjct 12079 GCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAA 12020 Query 172680 ATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAAT 172739 ||| | ||||| ||||| || || ||||| || |||||||| || || ||||| | ||| Sbjct 12019 ATACGTGCAGCCGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAAT 11960 Query 172740 GAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCA 172799 |||||||| | || |||||| | || ||||| || ||||| ||| || | ||||| Sbjct 11959 GAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCT 11900 Query 172800 GAAGAAGTCTTGCCACGAGGCAACGCACTATAA 172832 || || || | || || || ||||| || ||| Sbjct 11899 GAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 11867 >seq15224 Length=172684 Score = 226 bits (250), Expect = 3e-54 Identities = 292/402 (73%), Gaps = 1/402 (0%) Strand=Plus/Plus Query 171045 TATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCAT 171104 |||| || ||||| ||||| || || | || || ||| || ||| | | |||||| Sbjct 89312 TATGAGT-GCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAA 89370 Query 171105 TCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCA 171164 | ||||| || || |||||||||||||| |||| || || ||||| |||||||||| Sbjct 89371 TTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCA 89430 Query 171165 TGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 171224 || | || ||||| || || |||||||| || |||||||| || || ||| ||||||| Sbjct 89431 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAG 89490 Query 171225 CAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTC 171284 | ||| | ||||| || || || ||||| ||||| ||||| | || || ||| | Sbjct 89491 CTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTT 89550 Query 171285 TAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAG 171344 | || || || || || || || || | || | || || | || || ||||| | Sbjct 89551 TGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGG 89610 Query 171345 AAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATG 171404 ||||||| ||||| || || |||||||||| || || ||| |||| |||||||| |||| Sbjct 89611 AAGAAACTTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATG 89670 Query 171405 CATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 171446 | |||||||| || ||||| |||||||||||| | |||| Sbjct 89671 CTAGTTTCAACAATTCCCGTTCTTTACACTTCTTCTTAGCTG 89712 Score = 114 bits (126), Expect = 1e-20 Identities = 129/173 (75%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 171332 TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTA 171391 || || ||||| |||||||| ||||| || || ||||||||||| || || ||| |||| Sbjct 89743 TTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGTCGATTG 89802 Query 171392 ATCTTC------CAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCT 171445 |||||| || ||||| |||||||| |||||||| |||||||||||| | ||| Sbjct 89803 ATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCT 89862 Query 171446 GTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGC 171498 | | || |||||| || | ||||| || || | ||||| | || ||||| Sbjct 89863 GCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGC 89915 Score = 100 bits (110), Expect = 3e-16 Identities = 128/175 (73%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 170778 CTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATG 170837 |||| || |||||| |||| || || || | ||||| ||| |||| ||| | | || | Sbjct 89140 CTGC-CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACG 89198 Query 170838 GTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCT 170897 | ||||| || || |||||||| | |||| |||| || ||||| || || || | Sbjct 89199 GAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTT 89258 Query 170898 ATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTA 170952 |||| || ||||||||||| || | || |||||||| || || || |||||||| Sbjct 89259 ATCCAATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTA 89313 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 170711 TGGTTTGGTGTCTTAATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCA 170770 ||||||||||| || ||||| || | | ||||| || || || ||| |||| Sbjct 88977 TGGTTTGGTGTTTTGATGATTCCTACATTATTGACTGCAACTTCTGTATTTATTATAGCC 89036 Query 170771 TTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTC 170830 ||||| |||||||| |||||| |||| || || || | ||||| ||| |||| ||| | Sbjct 89037 TTCATTGCTGCTCCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTA 89096 Query 170831 TTATATGGTAACAACATCATCTCTGGTGC 170859 | || || ||||| || || |||||||| Sbjct 89097 CTTTACGGAAACAATATTATTTCTGGTGC 89125 >seq8938 Length=12132 Score = 138 bits (152), Expect = 1e-27 Identities = 223/320 (70%), Gaps = 2/320 (1%) Strand=Plus/Minus Query 172515 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 172574 || |||||| | || ||||| || | ||||| | || ||||| || ||||| | ||| Sbjct 2038 ACCGCTAACCGTTTTTGGTCCCAACTTTTTGGGGTTGCTTTTTCCAATAAAAGTTGGTTA 1979 Query 172575 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 172634 || ||| ||||||| || ||||| || | | | | |||| || | || | || Sbjct 1978 CATTTCTTTATGTTATTTGTACCAGTAACCGTTTTATGGATGAGTGCTCTTGGGGTAGTC 1919 Query 172635 GGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAA--GAGCAGCAG 172692 ||||| || | ||||| | || || ||||| || || ||||| ||| | ||||| | Sbjct 1918 GGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATATACGTGCAGCCG 1859 Query 172693 AAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAG 172752 |||| || || ||||| || |||||||| || || ||||| | ||||||||||| | | Sbjct 1858 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTG 1799 Query 172753 CATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGC 172812 | |||||| || ||||| || ||||| ||| || | ||||| || || || | | Sbjct 1798 CTTGGATGGTGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 1739 Query 172813 CACGAGGCAACGCACTATAA 172832 | || || ||||| || ||| Sbjct 1738 CCCGTGGAAACGCTCTTTAA 1719 >seq14024 Length=49420 Score = 125 bits (138), Expect = 8e-24 Identities = 239/352 (68%), Gaps = 5/352 (1%) Strand=Plus/Plus Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843 ||| | ||| ||||| || | ||||| |||||| ||||||| |||||| || | | Sbjct 34626 AAAAAAAATTATTTGATATTATGGATGACTGGTTACGTAGAGATCATTTCGTTTTTGTAG 34685 Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGG-----TT 171898 | | ||| ||||| || || || ||||||||||| | || | || |||||| || Sbjct 34686 GTTAGTCGGGTCTATTGCTCTTTCCTTGTGCTTATTTTGCTGTAGGGGGTTGGTTTAATT 34745 Query 171899 CGTAGGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGA 171958 ||| || || || || || |||||||| || ||||| || || |||||| | || Sbjct 34746 TACAGGTACGACGTTTGTAACTTCATGGTATACTCATGGGATGGCCAGTTCATATTTGGA 34805 Query 171959 GGGAGCAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCT 172018 || || || ||||| ||| | || || |||| | || | | | || | | Sbjct 34806 AGGCTGCAATTTCTTAACCGCAATCGATTCTACTCCTGCTAATAGTTTAGCACACTCTTT 34865 Query 172019 ATTGTTCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGG 172078 ||||| | ||||| ||||| |||||||| ||| || || ||| ||||||||| || Sbjct 34866 GTTGTTGTTGTGGGGTCCTGAAGCACAAGGCGATTTTACTCGTTGGCGTCAATTAGGCGG 34925 Query 172079 ACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATG 172130 | |||| ||||| || | ||||| | || ||||| |||||| | ||| Sbjct 34926 CCAGTGGACTTTTGTTGCTCTTCATGGTGCTTTCGGACTAATAGGTCTTATG 34977 >seq12877 Length=40778 Score = 111 bits (122), Expect = 2e-19 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 172649 CCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGA 172708 ||| || || || ||||| || || ||||| ||| | ||||| ||||| || || ||||| Sbjct 745 CCTTAGTGCCTATGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGA 804 Query 172709 AACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGT 172768 || |||||||| || || ||||| | ||||||||||| | || |||||| | || Sbjct 805 GACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCA 864 Query 172769 CGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACT 172828 ||||| || ||||| ||| || | ||||| || || || | || || || ||||| || Sbjct 865 AGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 924 Query 172829 ATAA 172832 ||| Sbjct 925 TTAA 928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569947396504320