Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_006884.2
Length=178249
Score E
Sequences producing significant alignments: (Bits) Value
seq11475 383 2e-101
seq15224 226 3e-54
seq8938 138 1e-27
seq14024 125 8e-24
seq12877 111 2e-19
>seq11475
Length=22225
Score = 383 bits (424), Expect = 2e-101
Identities = 718/1053 (68%), Gaps = 29/1053 (3%)
Strand=Plus/Minus
Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843
||| ||| | ||||| || | ||||| |||||| ||||| |||||||| || | |
Sbjct 12894 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAG 12835
Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 171903
| ||||||||||| || || || ||||||||||| | || | || |||||||| ||
Sbjct 12834 GTTGGTCTGGTCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACAG 12775
Query 171904 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 171963
| || || || || || |||||||| || ||||| | || |||||| | || ||
Sbjct 12774 GTACGACGTTTGTAACTTCATGGTATACTCATGGGTTGGCCAGTTCATATTTGGAAGGCT 12715
Query 171964 CAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 172023
|| || ||||| ||||| || || || |||| | || | | | || | | ||||
Sbjct 12714 GCAATTTCTTAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGT 12655
Query 172024 TCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 172083
| || ||||| ||||| |||||||| ||| || || |||| ||||||||| || || |
Sbjct 12654 TGCTGTGGGGTCCTGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGT 12595
Query 172084 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 172143
||| ||||| || | ||||| | || ||||| |||||||| ||| | | || || |
Sbjct 12594 GGACTTTTGTTGCTCTTCATGGTGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCG 12535
Query 172144 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTG 172203
| |||| || |||| | || ||||| || ||| |||||||||| | ||||
Sbjct 12534 AACTTGCTCGATCTGTTCAATTGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTG 12475
Query 172204 CAGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCAC 172263
| || || | || ||||| |||||| ||||||| | |||||||||| || |
Sbjct 12474 CTGTTTTTGTTTCTGTATTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGC 12415
Query 172264 CTTCATTTGGTGTCGCAGCAATCTTTCGTTATAT----TTTATTCATACAGGGTTTCCAC 172319
|| |||||||| ||||| || ||||| | || ||| |||| ||||||| ||
Sbjct 12414 CTAGTTTTGGTGTAGCAGCTATTTTTCGATTCATCCTCTTTTTTCA---AGGGTTT-CAT 12359
Query 172320 AATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTA 172379
||| || || || || |||||||||||||| || || ||| || | || | || |
Sbjct 12358 AATTGGACGCTGAACCCTTTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCTCTG 12299
Query 172380 CTATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATAC 172439
||||| || || |||||||| || ||| | || || || | || ||
Sbjct 12298 CTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAGGA------------- 12252
Query 172440 ACTGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAA 172499
|| | | | ||| |||| ||| | || || | || || || | ||||||
Sbjct 12251 --TG--GTGATGGGGCAA-ATACA---TTCCGGGCTTTTAACCCAACTCAAGCTGAAGAA 12200
Query 172500 ACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCA 172559
|||||| ||| | || |||||| | || ||||| || || ||||| | || |||||
Sbjct 12199 ACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCC 12140
Query 172560 AACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCA 172619
|| ||| | | ||||| ||| ||||||| || ||||| || | ||| | ||||
Sbjct 12139 AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGT 12080
Query 172620 TCTATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAG 172679
|| | || | || ||||| || | ||||| | || || ||||| || || |||||
Sbjct 12079 GCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAA 12020
Query 172680 ATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAAT 172739
||| | ||||| ||||| || || ||||| || |||||||| || || ||||| | |||
Sbjct 12019 ATACGTGCAGCCGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAAT 11960
Query 172740 GAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCA 172799
|||||||| | || |||||| | || ||||| || ||||| ||| || | |||||
Sbjct 11959 GAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCT 11900
Query 172800 GAAGAAGTCTTGCCACGAGGCAACGCACTATAA 172832
|| || || | || || || ||||| || |||
Sbjct 11899 GAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 11867
>seq15224
Length=172684
Score = 226 bits (250), Expect = 3e-54
Identities = 292/402 (73%), Gaps = 1/402 (0%)
Strand=Plus/Plus
Query 171045 TATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCAT 171104
|||| || ||||| ||||| || || | || || ||| || ||| | | ||||||
Sbjct 89312 TATGAGT-GCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAA 89370
Query 171105 TCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCA 171164
| ||||| || || |||||||||||||| |||| || || ||||| ||||||||||
Sbjct 89371 TTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCA 89430
Query 171165 TGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 171224
|| | || ||||| || || |||||||| || |||||||| || || ||| |||||||
Sbjct 89431 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAG 89490
Query 171225 CAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTC 171284
| ||| | ||||| || || || ||||| ||||| ||||| | || || ||| |
Sbjct 89491 CTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTT 89550
Query 171285 TAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAG 171344
| || || || || || || || || | || | || || | || || ||||| |
Sbjct 89551 TGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGG 89610
Query 171345 AAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATG 171404
||||||| ||||| || || |||||||||| || || ||| |||| |||||||| ||||
Sbjct 89611 AAGAAACTTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATG 89670
Query 171405 CATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 171446
| |||||||| || ||||| |||||||||||| | ||||
Sbjct 89671 CTAGTTTCAACAATTCCCGTTCTTTACACTTCTTCTTAGCTG 89712
Score = 114 bits (126), Expect = 1e-20
Identities = 129/173 (75%), Gaps = 6/173 (3%)
Strand=Plus/Plus
Query 171332 TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTA 171391
|| || ||||| |||||||| ||||| || || ||||||||||| || || ||| ||||
Sbjct 89743 TTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGTCGATTG 89802
Query 171392 ATCTTC------CAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCT 171445
|||||| || ||||| |||||||| |||||||| |||||||||||| | |||
Sbjct 89803 ATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCT 89862
Query 171446 GTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGC 171498
| | || |||||| || | ||||| || || | ||||| | || |||||
Sbjct 89863 GCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGC 89915
Score = 100 bits (110), Expect = 3e-16
Identities = 128/175 (73%), Gaps = 1/175 (1%)
Strand=Plus/Plus
Query 170778 CTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATG 170837
|||| || |||||| |||| || || || | ||||| ||| |||| ||| | | || |
Sbjct 89140 CTGC-CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACG 89198
Query 170838 GTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCT 170897
| ||||| || || |||||||| | |||| |||| || ||||| || || || |
Sbjct 89199 GAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTT 89258
Query 170898 ATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTA 170952
|||| || ||||||||||| || | || |||||||| || || || ||||||||
Sbjct 89259 ATCCAATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTA 89313
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 170711 TGGTTTGGTGTCTTAATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCA 170770
||||||||||| || ||||| || | | ||||| || || || ||| ||||
Sbjct 88977 TGGTTTGGTGTTTTGATGATTCCTACATTATTGACTGCAACTTCTGTATTTATTATAGCC 89036
Query 170771 TTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTC 170830
||||| |||||||| |||||| |||| || || || | ||||| ||| |||| ||| |
Sbjct 89037 TTCATTGCTGCTCCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTA 89096
Query 170831 TTATATGGTAACAACATCATCTCTGGTGC 170859
| || || ||||| || || ||||||||
Sbjct 89097 CTTTACGGAAACAATATTATTTCTGGTGC 89125
>seq8938
Length=12132
Score = 138 bits (152), Expect = 1e-27
Identities = 223/320 (70%), Gaps = 2/320 (1%)
Strand=Plus/Minus
Query 172515 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 172574
|| |||||| | || ||||| || | ||||| | || ||||| || ||||| | |||
Sbjct 2038 ACCGCTAACCGTTTTTGGTCCCAACTTTTTGGGGTTGCTTTTTCCAATAAAAGTTGGTTA 1979
Query 172575 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 172634
|| ||| ||||||| || ||||| || | | | | |||| || | || | ||
Sbjct 1978 CATTTCTTTATGTTATTTGTACCAGTAACCGTTTTATGGATGAGTGCTCTTGGGGTAGTC 1919
Query 172635 GGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAA--GAGCAGCAG 172692
||||| || | ||||| | || || ||||| || || ||||| ||| | ||||| |
Sbjct 1918 GGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATATACGTGCAGCCG 1859
Query 172693 AAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAG 172752
|||| || || ||||| || |||||||| || || ||||| | ||||||||||| | |
Sbjct 1858 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTG 1799
Query 172753 CATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGC 172812
| |||||| || ||||| || ||||| ||| || | ||||| || || || | |
Sbjct 1798 CTTGGATGGTGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 1739
Query 172813 CACGAGGCAACGCACTATAA 172832
| || || ||||| || |||
Sbjct 1738 CCCGTGGAAACGCTCTTTAA 1719
>seq14024
Length=49420
Score = 125 bits (138), Expect = 8e-24
Identities = 239/352 (68%), Gaps = 5/352 (1%)
Strand=Plus/Plus
Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843
||| | ||| ||||| || | ||||| |||||| ||||||| |||||| || | |
Sbjct 34626 AAAAAAAATTATTTGATATTATGGATGACTGGTTACGTAGAGATCATTTCGTTTTTGTAG 34685
Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGG-----TT 171898
| | ||| ||||| || || || ||||||||||| | || | || |||||| ||
Sbjct 34686 GTTAGTCGGGTCTATTGCTCTTTCCTTGTGCTTATTTTGCTGTAGGGGGTTGGTTTAATT 34745
Query 171899 CGTAGGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGA 171958
||| || || || || || |||||||| || ||||| || || |||||| | ||
Sbjct 34746 TACAGGTACGACGTTTGTAACTTCATGGTATACTCATGGGATGGCCAGTTCATATTTGGA 34805
Query 171959 GGGAGCAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCT 172018
|| || || ||||| ||| | || || |||| | || | | | || | |
Sbjct 34806 AGGCTGCAATTTCTTAACCGCAATCGATTCTACTCCTGCTAATAGTTTAGCACACTCTTT 34865
Query 172019 ATTGTTCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGG 172078
||||| | ||||| ||||| |||||||| ||| || || ||| ||||||||| ||
Sbjct 34866 GTTGTTGTTGTGGGGTCCTGAAGCACAAGGCGATTTTACTCGTTGGCGTCAATTAGGCGG 34925
Query 172079 ACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATG 172130
| |||| ||||| || | ||||| | || ||||| |||||| | |||
Sbjct 34926 CCAGTGGACTTTTGTTGCTCTTCATGGTGCTTTCGGACTAATAGGTCTTATG 34977
>seq12877
Length=40778
Score = 111 bits (122), Expect = 2e-19
Identities = 135/184 (73%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 172649 CCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGA 172708
||| || || || ||||| || || ||||| ||| | ||||| ||||| || || |||||
Sbjct 745 CCTTAGTGCCTATGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGA 804
Query 172709 AACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGT 172768
|| |||||||| || || ||||| | ||||||||||| | || |||||| | ||
Sbjct 805 GACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCA 864
Query 172769 CGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACT 172828
||||| || ||||| ||| || | ||||| || || || | || || || ||||| ||
Sbjct 865 AGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 924
Query 172829 ATAA 172832
|||
Sbjct 925 TTAA 928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569947396504320
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