Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq16048 132 6e-26 seq15946 131 2e-25 seq11586 131 2e-25 seq16162 89.7 6e-13 seq16271 82.4 1e-10 >seq16048 Length=246288 Score = 132 bits (146), Expect = 6e-26 Identities = 387/587 (66%), Gaps = 17/587 (3%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| || || |||||||| ||||||||||| | | ||| ||||| || || || || | Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| || |||||||||||||||||||| || | ||| ||||||||||| Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 204395 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT--CATGT 33480 || || || || ||||| || |||| ||||| || | || | | | ||| Sbjct 204394 TATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA--CGTCTCAGAACCATCA 204337 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| |||||||| |||||||| || || ||| ||||| || | ||| | Sbjct 204336 ATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACGA 204277 Query 33541 AAGAGATAGtttttttCATT-ACTA-TCTTTAACATAAGTATCGATCAAAAGACTATACA 33598 || | || | |||| || | || | || ||| || || | |||||| |||| Sbjct 204276 AACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACA 204219 Query 33599 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33658 | ||||||||||| || ||||| || |||||||| ||||| || | || |||| | Sbjct 204218 TCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGA 204159 Query 33659 TCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718 ||| | || | || || ||| | || || || || || ||| || | Sbjct 204158 GCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGG 204099 Query 33719 CAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGT---GTTAGTTTAT 33772 |||| || || | || || | || |||| || ||||| ||| | | ||| | Sbjct 204098 CAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATCGTC-GGTCAAGGTCGTTGA- 204041 Query 33773 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 33832 ||| | | | |||| || | ||| |||||||| | |||||||| ||||| || | Sbjct 204040 -CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGG 203982 Query 33833 CCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATA 33879 | || || ||||| | |||||| | || || |||||||| ||| Sbjct 203981 CTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 203935 >seq15946 Length=172941 Score = 131 bits (144), Expect = 2e-25 Identities = 238/343 (69%), Gaps = 8/343 (2%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| || || |||||||| ||||||||||| | | ||| ||||| || || || || | Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| || |||||||||||||||||||| || | ||| ||||||||||| Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 58460 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT--CATGT 33480 || || || || ||||| || |||| ||||| || | || | | | ||| Sbjct 58459 TATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA--CGTCTCAGAACCATCA 58402 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| |||||||| |||||||| || || ||| ||||| || | ||| | Sbjct 58401 ATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACGA 58342 Query 33541 AAGAGATAGtttttttCATT-ACTA-TCTTTAACATAAGTATCGATCAAAAGACTATACA 33598 || | || | |||| || | || | || ||| || || | |||||| |||| Sbjct 58341 AACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACA 58284 Query 33599 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33641 | ||||||||||| || ||||| || |||||||| ||||| || Sbjct 58283 TCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAA 58241 >seq11586 Length=26096 Score = 131 bits (144), Expect = 2e-25 Identities = 238/343 (69%), Gaps = 8/343 (2%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| || || |||||||| ||||||||||| | | ||| ||||| || || || || | Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| || |||||||||||||||||||| || | ||| ||||||||||| Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 4218 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT--CATGT 33480 || || || || ||||| || |||| ||||| || | || | | | ||| Sbjct 4217 TATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA--CGTCTCAGAACCATCA 4160 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| |||||||| |||||||| || || ||| ||||| || | ||| | Sbjct 4159 ATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACGA 4100 Query 33541 AAGAGATAGtttttttCATT-ACTA-TCTTTAACATAAGTATCGATCAAAAGACTATACA 33598 || | || | |||| || | || | || ||| || || | |||||| |||| Sbjct 4099 AACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACA 4042 Query 33599 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33641 | ||||||||||| || ||||| || |||||||| ||||| || Sbjct 4041 TCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAA 3999 >seq16162 Length=245457 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || ||||| || | ||| || ||||| || || ||||| | | ||| | | || | Sbjct 40932 GTGCCAGCATTGAAGAGGGTCGGGGAAGCATGAGTGAACCACCTCTGAGACATGAAATGG 40873 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || || | || || || || ||||| | ||| || || ||||| || | ||| ||| Sbjct 40872 TATGTTTTGATTGCAGACTCAATATCGTCCTTATGGATACCGACTGCAACTCTCATCAAC 40813 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 || |||||||| || || || | ||| | | ||||||| || ||| | || | Sbjct 40812 ATATGCTGAGGCCTCTCCACAACCTTTCCACTAACCTTCAACAGATACGATCTCTCGAGG 40753 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||| ||||||||||| | || |||||| || |||||||| || Sbjct 40752 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGGTCGTAAATGAT 40706 >seq16271 Length=354655 Score = 82.4 bits (90), Expect = 1e-10 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | |||| |||||||| ||| | || | || ||| ||| |||| || Sbjct 278735 TCCTCCTTGATCAACATATCGAGCGGTGTCATTGAACACCCGCAGCATCGGAGTAATGCC 278794 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 |||||| ||||| || || || || || || ||||||||||||| ||| || Sbjct 278795 ATTTGATGCTCCATTTGTGCCACGAATGTAACTGCCTGTGGCACGAATATTGTGAATAGA 278854 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || || || || |||| || | || ||| || || || || || || Sbjct 278855 GACACCAATACCTCCAGCAGATTTACTTATAACAGCACATTCCTTCAATGTATCGTAAAT 278914 Query 63551 ACCCTCTATGCTATCATCGATCATG 63575 ||||| ||||| || || ||||| Sbjct 278915 GCCCTCGATGCTGTCCTCTTTCATG 278939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622596106958080