Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq16149 98.7 9e-16 seq15394 86.0 6e-12 seq13717 86.0 6e-12 seq13853 84.2 2e-11 seq16084 82.4 7e-11 >seq16149 Length=224952 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || |||| || | || | ||||| Sbjct 103460 AAGATGCAGATATTCGTGAAAACCCTAACGGGGAAGACGATAACATTGGAGGTTGAATCC 103519 Query 26826 AACGACACCATCGAGCAAGTCAA-ACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 |||||||||||| | || || || ||| ||| ||||| ||||| || |||||||| Sbjct 103520 TCCGACACCATCGACAATGTGAAGACCAAA-ATTCAAGACAAGGAAGGCATCCCTCCCGA 103578 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 |||||| | ||||| | || ||| ||||| || ||||| | | | || |||||| Sbjct 103579 CCAACAACGTCTCATCTTCGCCGGAAAACAGCTTGAAGACGGCCGTACACTCGCCGACTA 103638 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| || |||| || ||||| Sbjct 103639 CAACATCCAGAAGGAATCAACCCTCCACCTTGTCCT 103674 >seq15394 Length=94532 Score = 86.0 bits (94), Expect = 6e-12 Identities = 144/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 26760 TCAAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT 26818 |||| ||| ||||| | || || ||||| ||||||| ||| | || ||| | ||| | Sbjct 44158 TCAATCAATCATGCAGATCTTCGTGAAAACCCTAACTGGGAAAACAATAACCCTAGAAGT 44217 Query 26819 AGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACC 26878 |||||| ||||| ||||| | | ||| |||||| || || || ||||| || Sbjct 44218 CGAATCATCGGACACAATCGACAATTTGAAATCGAAGATTCAAGAGAAGGAGGGGATTCC 44277 Query 26879 TCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG 26938 | ||||||||||| || || | || || ||||| |||||||||| ||| | Sbjct 44278 AGCGGATCAACAAAGGCTAATCTTCGCTGGAAAACAGCTCGAAGATGGCCGAACAATGGC 44337 Query 26939 CGACTATAACATTCAAAAAGAATCTAC 26965 ||||| ||||| || || ||||| || Sbjct 44338 GGACTACAACATCCAGAAGGAATCGAC 44364 >seq13717 Length=68558 Score = 86.0 bits (94), Expect = 6e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 26762 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA 26821 ||| |||||||| | || || ||||| |||| || || |||| ||| | || | || Sbjct 35241 AAAAAAAATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATAACCCTAGAGGTTGA 35182 Query 26822 ATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCC 26881 ||| ||||||||||| | || ||| ||||| ||||| ||||| || || || Sbjct 35181 ATCCTCAGACACCATCGACAATGTGAAAACCAAGATCCAAGACAAGGAAGGCATTCCACC 35122 Query 26882 CGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGA 26923 || |||||| | ||||||| || ||| ||||| || ||||| Sbjct 35121 AGACCAACAACGTCTCATTTTCGCCGGAAAACAGCTTGAAGA 35080 >seq13853 Length=43806 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | |||||||| || || || || || | ||||| |||| | || | | Sbjct 9522 ATGCAGATTTTTGTAAAGACCTTGACGGGGAAGACCATCACTCTCGAGGTTGAGAGCAGC 9581 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| |||||| ||||| || || || || || || || Sbjct 9582 GACACCATCGACAACGTCAAGACAAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 9641 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | |||| || || || || ||||| |||| | | | |||||||||| Sbjct 9642 CAGCGTTTGATTTTCGCAGGAAAGCAGCTCGAGGATGGGCGCACATTGGCCGACTATAAC 9701 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGT 26977 |||||||| || || ||| |||||||||| Sbjct 9702 ATTCAAAAGGAGTCAACTCTCCATCTGGT 9730 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || ||||| || | |||||| |||| | || | | Sbjct 19562 ATGCAGATTTTCGTGAAGACCTTGACTGGGAAGACTATCACCCTCGAGGTTGAGAGCAGC 19621 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| |||||| ||||| || || || || || || || Sbjct 19622 GACACCATCGACAACGTCAAGACAAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 19681 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | |||| || || || || ||||| |||| | | | |||||||||| Sbjct 19682 CAGCGTTTGATTTTCGCAGGAAAGCAGCTCGAGGATGGGCGCACATTGGCCGACTATAAC 19741 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGT 26977 |||||||| || || ||| |||||||||| Sbjct 19742 ATTCAAAAGGAGTCAACTCTCCATCTGGT 19770 >seq16084 Length=201933 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || || || ||||| |||||||| | || |||| ||| Sbjct 158 ATGCAAATCTTTGTCAAGACTTTGACGGGAAAGACGATCACCCTAGAGGTAGAG---AAC 214 Query 26829 ---GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| ||||| | || || ||||| || || || ||||| || || || Sbjct 215 TCTGACACGATCGACAACGTAAAGTCTAAGATCCAGGATAAGGAGGGGATTCCACCAGAC 274 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||| | || |||| | || ||||| |||||||||| ||| | |||||| Sbjct 275 CAACAACGGCTAATTTTTGCGGGAAAACAGCTCGAAGATGGACGAACACTAGCCGACTAC 334 Query 26946 AACATTCAAAAAGAATCTAC 26965 ||||||||||| ||||| || Sbjct 335 AACATTCAAAAGGAATCAAC 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478392625871360