Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq16149 98.7 9e-16
seq15394 86.0 6e-12
seq13717 86.0 6e-12
seq13853 84.2 2e-11
seq16084 82.4 7e-11
>seq16149
Length=224952
Score = 98.7 bits (108), Expect = 9e-16
Identities = 153/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|| ||||| | || || ||||| |||| || || |||| || | || | |||||
Sbjct 103460 AAGATGCAGATATTCGTGAAAACCCTAACGGGGAAGACGATAACATTGGAGGTTGAATCC 103519
Query 26826 AACGACACCATCGAGCAAGTCAA-ACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884
|||||||||||| | || || || ||| ||| ||||| ||||| || ||||||||
Sbjct 103520 TCCGACACCATCGACAATGTGAAGACCAAA-ATTCAAGACAAGGAAGGCATCCCTCCCGA 103578
Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944
|||||| | ||||| | || ||| ||||| || ||||| | | | || ||||||
Sbjct 103579 CCAACAACGTCTCATCTTCGCCGGAAAACAGCTTGAAGACGGCCGTACACTCGCCGACTA 103638
Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||| || || ||||| || |||| || |||||
Sbjct 103639 CAACATCCAGAAGGAATCAACCCTCCACCTTGTCCT 103674
>seq15394
Length=94532
Score = 86.0 bits (94), Expect = 6e-12
Identities = 144/207 (70%), Gaps = 1/207 (0%)
Strand=Plus/Plus
Query 26760 TCAAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT 26818
|||| ||| ||||| | || || ||||| ||||||| ||| | || ||| | ||| |
Sbjct 44158 TCAATCAATCATGCAGATCTTCGTGAAAACCCTAACTGGGAAAACAATAACCCTAGAAGT 44217
Query 26819 AGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACC 26878
|||||| ||||| ||||| | | ||| |||||| || || || ||||| ||
Sbjct 44218 CGAATCATCGGACACAATCGACAATTTGAAATCGAAGATTCAAGAGAAGGAGGGGATTCC 44277
Query 26879 TCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG 26938
| ||||||||||| || || | || || ||||| |||||||||| ||| |
Sbjct 44278 AGCGGATCAACAAAGGCTAATCTTCGCTGGAAAACAGCTCGAAGATGGCCGAACAATGGC 44337
Query 26939 CGACTATAACATTCAAAAAGAATCTAC 26965
||||| ||||| || || ||||| ||
Sbjct 44338 GGACTACAACATCCAGAAGGAATCGAC 44364
>seq13717
Length=68558
Score = 86.0 bits (94), Expect = 6e-12
Identities = 116/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 26762 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA 26821
||| |||||||| | || || ||||| |||| || || |||| ||| | || | ||
Sbjct 35241 AAAAAAAATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATAACCCTAGAGGTTGA 35182
Query 26822 ATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCC 26881
||| ||||||||||| | || ||| ||||| ||||| ||||| || || ||
Sbjct 35181 ATCCTCAGACACCATCGACAATGTGAAAACCAAGATCCAAGACAAGGAAGGCATTCCACC 35122
Query 26882 CGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGA 26923
|| |||||| | ||||||| || ||| ||||| || |||||
Sbjct 35121 AGACCAACAACGTCTCATTTTCGCCGGAAAACAGCTTGAAGA 35080
>seq13853
Length=43806
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | |||||||| || || || || || | ||||| |||| | || | |
Sbjct 9522 ATGCAGATTTTTGTAAAGACCTTGACGGGGAAGACCATCACTCTCGAGGTTGAGAGCAGC 9581
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | ||||| |||||| ||||| || || || || || || ||
Sbjct 9582 GACACCATCGACAACGTCAAGACAAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 9641
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| | | |||| || || || || ||||| |||| | | | ||||||||||
Sbjct 9642 CAGCGTTTGATTTTCGCAGGAAAGCAGCTCGAGGATGGGCGCACATTGGCCGACTATAAC 9701
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGT 26977
|||||||| || || ||| ||||||||||
Sbjct 9702 ATTCAAAAGGAGTCAACTCTCCATCTGGT 9730
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | || || || || || ||||| || | |||||| |||| | || | |
Sbjct 19562 ATGCAGATTTTCGTGAAGACCTTGACTGGGAAGACTATCACCCTCGAGGTTGAGAGCAGC 19621
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | ||||| |||||| ||||| || || || || || || ||
Sbjct 19622 GACACCATCGACAACGTCAAGACAAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 19681
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| | | |||| || || || || ||||| |||| | | | ||||||||||
Sbjct 19682 CAGCGTTTGATTTTCGCAGGAAAGCAGCTCGAGGATGGGCGCACATTGGCCGACTATAAC 19741
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGT 26977
|||||||| || || ||| ||||||||||
Sbjct 19742 ATTCAAAAGGAGTCAACTCTCCATCTGGT 19770
>seq16084
Length=201933
Score = 82.4 bits (90), Expect = 7e-11
Identities = 139/200 (70%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | ||||| || || || || ||||| |||||||| | || |||| |||
Sbjct 158 ATGCAAATCTTTGTCAAGACTTTGACGGGAAAGACGATCACCCTAGAGGTAGAG---AAC 214
Query 26829 ---GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
||||| ||||| | || || ||||| || || || ||||| || || ||
Sbjct 215 TCTGACACGATCGACAACGTAAAGTCTAAGATCCAGGATAAGGAGGGGATTCCACCAGAC 274
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|||||| | || |||| | || ||||| |||||||||| ||| | ||||||
Sbjct 275 CAACAACGGCTAATTTTTGCGGGAAAACAGCTCGAAGATGGACGAACACTAGCCGACTAC 334
Query 26946 AACATTCAAAAAGAATCTAC 26965
||||||||||| ||||| ||
Sbjct 335 AACATTCAAAAGGAATCAAC 354
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478392625871360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |